WormBase Tree Display for Gene: WBGene00021890
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| WBGene00021890 | SMap | S_parent | Sequence | Y54G2A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | Y54G2A.26 | |||||||
| Molecular_name | Y54G2A.26a | ||||||||
| Y54G2A.26a.1 | |||||||||
| CE30050 | |||||||||
| Y54G2A.26b | |||||||||
| CE33888 | |||||||||
| Y54G2A.26c | |||||||||
| CE48762 | |||||||||
| Y54G2A.26b.1 | |||||||||
| Y54G2A.26c.1 | |||||||||
| Other_name | Y54G2A.f | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y54G2A.g | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| Y54G2A.h | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y54G2A.26 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | Y54G2A.26 | ||||||||
| DB_info | Database | AceView | gene | 4D752 | |||||
| WormQTL | gene | WBGene00021890 | |||||||
| WormFlux | gene | WBGene00021890 | |||||||
| NDB | locus_tag | CELE_Y54G2A.26 | |||||||
| NCBI | gene | 177079 | |||||||
| RefSeq | protein | NM_001028328.4 | |||||||
| NM_001028329.4 | |||||||||
| NM_001380121.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF320630 | |||||||
| TrEMBL | UniProtAcc | Q86FN6 | |||||||
| Q9N3A3 | |||||||||
| U4PDX1 | |||||||||
| UniProt_GCRP | UniProtAcc | Q9N3A3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (165) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00001514 | ||||||||
| WBGene00219425 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in excretory gland cell; germ line; head mesodermal cell; neuronal sheath cell; and neurons based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-12; hsf-1; and eat-2 based on tiling array; RNA-seq; microarray; and proteomic studies. Is affected by eight chemicals including hydrogen sulfide; Cry5B; and Rifampin based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domain: Phosphorylation site. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y54G2A.26a | |||||||
| Y54G2A.26b | |||||||||
| Y54G2A.26c | |||||||||
| Corresponding_transcript | Y54G2A.26a.1 | ||||||||
| Y54G2A.26b.1 | |||||||||
| Y54G2A.26c.1 | |||||||||
| Other_sequence (16) | |||||||||
| Associated_feature (17) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00057459 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00037492 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000336 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057458 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1019322 | ||||||||
| Expr1039613 | |||||||||
| Expr1160890 | |||||||||
| Expr2007940 | |||||||||
| Expr2026182 | |||||||||
| Drives_construct | WBCnstr00024415 | ||||||||
| Construct_product | WBCnstr00024415 | ||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (141) | |||||||||
| Interaction | WBInteraction000030526 | ||||||||
| WBInteraction000513446 | |||||||||
| Map_info | Positive | Positive_clone | Y54G2A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | IV | -6.66184 | |||||||
| Method | Gene |
