WormBase Tree Display for Gene: WBGene00022182
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| WBGene00022182 | SMap | S_parent | Sequence | Y71H2AM | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | swsn-3 | Person_evidence | WBPerson407 | |||||
| WBPerson552 | |||||||||
| Sequence_name | Y71H2AM.17 | ||||||||
| Molecular_name | Y71H2AM.17 | ||||||||
| Y71H2AM.17.1 | |||||||||
| CE39070 | |||||||||
| Other_name | CELE_Y71H2AM.17 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | swsn-3 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:05 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 11 Feb 2011 15:09:46 | WBPerson2970 | Name_change | CGC_name | swsn-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | swsn | ||||||||
| Allele (189) | |||||||||
| Strain | WBStrain00031317 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00091846 | ||||||||
| 00091847 | |||||||||
| 00091848 | |||||||||
| 00091849 | |||||||||
| 00091850 | |||||||||
| 00091851 | |||||||||
| 00091852 | |||||||||
| Ortholog (39) | |||||||||
| Paralog | WBGene00001972 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00001973 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00001974 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00008081 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00012209 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable nuclear receptor binding activity. Predicted to be involved in negative regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of SWI/SNF complex. Used to study alcohol use disorder. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 5 and familial meningioma. Is an ortholog of human SMARCE1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:1574 | Homo sapiens | Paper_evidence | WBPaper00046494 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 20 May 2019 00:00:00 | ||||||||
| Potential_model | DOID:3565 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11109) | |||||
| DOID:0112368 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11109) | ||||||
| DOID:4586 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11109) | ||||||
| Models_disease_asserted | WBDOannot00000666 | ||||||||
| Molecular_info | Corresponding_CDS | Y71H2AM.17 | |||||||
| Corresponding_CDS_history | Y71H2AM.17:wp147 | ||||||||
| Corresponding_transcript | Y71H2AM.17.1 | ||||||||
| Other_sequence (39) | |||||||||
| Associated_feature | WBsf650887 | ||||||||
| WBsf976053 | |||||||||
| WBsf981416 | |||||||||
| WBsf991600 | |||||||||
| WBsf226302 | |||||||||
| Transcription_factor | WBTranscriptionFactor001149 | ||||||||
| Experimental_info | RNAi_result (49) | ||||||||
| Expr_pattern | Expr1028452 | ||||||||
| Expr1039780 | |||||||||
| Expr1161658 | |||||||||
| Expr2017158 | |||||||||
| Expr2035294 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (127) | |||||||||
| Interaction (40) | |||||||||
| Map_info | Map | III | Position | -10.4171 | Error | 0.079185 | |||
| Positive | Positive_clone | Y71H2AM | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027412 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046494 | |||||||||
| WBPaper00048493 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064415 | |||||||||
| WBPaper00065308 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
