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WormBase Tree Display for Gene: WBGene00037524

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Name Class

WBGene00037524SMapS_parentSequencecb25.fpc4079a
IdentityVersion2
NameCGC_nameCbr-lron-5From_analysisInferred_from_orthology
Sequence_nameCBG18027
Molecular_nameCBG18027
CBG18027.1
CBP34034
Other_nameCBG_18027Accession_evidenceNDBHE600963
Public_nameCbr-lron-5
DB_infoDatabaseNDBlocus_tagCBG_18027
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:07WBPerson1971EventImportedInitial conversion from brigace
209 Dec 2011 15:52:14WBPerson2970Name_changeCGC_nameCbr-lron-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlron
RNASeq_FPKMWBls:00000021.58344From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
2.39911From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.79516From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
2.81874From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
1.2978From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
2.12379From_analysisRNASeq.briggsae.WBls:0000002.control_mean
2.1893From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030.145838From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.291675From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
0.097225From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000041.81935From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBls:0000004.control_median
1.88522From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
1.95109From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
1.49047From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
1.75056From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
1.86283From_analysisRNASeq.briggsae.WBls:0000004.control_mean
2.30269From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
WBls:0000024 (12)
WBls:00000270.173426From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
1.23713From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3.02523From_analysisRNASeq.briggsae.WBls:0000027.control_mean
7.66514From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
10.1644From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
4.45114From_analysisRNASeq.briggsae.WBls:0000027.control_median
4.81002From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000356.90357From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.487742From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.89141From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
3.29593From_analysisRNASeq.briggsae.WBls:0000038.control_median
3.32821From_analysisRNASeq.briggsae.WBls:0000038.control_mean
3.70045From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
6.23324From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:00000410.253495From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.282367From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.316778From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.351189From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.450498From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.914941From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.547966From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.637174From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.744742From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
1.27631From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.234852From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.611173From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.750404From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.833454From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.06985From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
1.50099From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0.910127From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.958838From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.58576From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:00001011.50099From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.75146From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
1.49573From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.64224From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (28)
ParalogWBGene00025696Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029553Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029554Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00033540Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035250Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035613Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041068Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Leucine-rich repeat, typical subtype; Leucine-rich repeat; Leucine-rich repeat domain superfamily; Cysteine-rich flanking region, C-terminal; and Leucine rich repeat. Is an ortholog of C. elegans lron-5.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG18027
Corresponding_CDS_historyCBG18027:bp194
Corresponding_transcriptCBG18027.1
Other_sequenceHCC07413_1
Dviv_isotig30850
HC05615
Oden_isotig24064
Experimental_infoExpr_patternExpr1054915
Microarray_resultsGPL8303_CB6_WBGene00037524_A
GPL8303_CB6_WBGene00037524_B
GPL14143_CBG18027_1565-1624_0.923_7_C
GPL14143_CBG18027_1703-1762_0.952_3_B
GPL14143_CBG18027_1828-1887_0.961_2_A
MethodGene