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WormBase Tree Display for Gene: WBGene00033540

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Name Class

WBGene00033540SMapS_parentSequencecb25.fpc2888a2
IdentityVersion2
NameCGC_nameCbr-lron-6From_analysisInferred_from_orthology
Sequence_nameCBG12622
Molecular_nameCBG12622
CBG12622.1
CBP38994
Other_nameCBG_12622Accession_evidenceNDBHE600940
Public_nameCbr-lron-6
DB_infoDatabaseNDBlocus_tagCBG_12622
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:52:03WBPerson1971EventImportedInitial conversion from brigace
209 Dec 2011 15:52:14WBPerson2970Name_changeCGC_nameCbr-lron-6
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlron
Allele (14)
RNASeq_FPKMWBls:00000020.390755From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
0.442265From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
0.530717From_analysisRNASeq.briggsae.WBls:0000002.control_mean
0.75913From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
0.313958From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
0.41651From_analysisRNASeq.briggsae.WBls:0000002.control_median
0.476527From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.071562From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.143125From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
0.047708From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000040.091509From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
0.183017From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
0.046145From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
0.04968From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
0.055768From_analysisRNASeq.briggsae.WBls:0000004.control_mean
WBls:0000024 (12)
WBls:00000271.20605From_analysisRNASeq.briggsae.WBls:0000027.control_mean
0From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
3.61815From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.99872From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.4039From_analysisRNASeq.briggsae.WBls:0000027.control_mean
1.99744From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:00000350.717022From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.427588From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
0.643308From_analysisRNASeq.briggsae.WBls:0000038.control_median
0.716421From_analysisRNASeq.briggsae.WBls:0000038.control_mean
0.859027From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
1.57907From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
WBls:00000410.041043From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.116636From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.134514From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.148059From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.152392From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.282164From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
0.210174From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.218852From_analysisRNASeq.briggsae.WBls:0000041.control_mean
0.267955From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
0.452919From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.076915From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
0.202567From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0.226912From_analysisRNASeq.briggsae.WBls:0000063.control_mean
0.376612From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
0.478467From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
0.148555From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
0.175561From_analysisRNASeq.briggsae.WBls:0000063.control_median
0.213853From_analysisRNASeq.briggsae.WBls:0000063.control_mean
WBls:00001010.282164From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.651543From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
0.235261From_analysisRNASeq.briggsae.total_over_all_stages.control_median
0.583458From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
Ortholog (25)
ParalogWBGene00025696Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029553Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029554Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035250Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00035613Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00037524Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00041068Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Leucine-rich repeat; Leucine-rich repeat domain superfamily; Leucine rich repeat; and Leucine-rich repeat, typical subtype. Is an ortholog of C. elegans lron-6.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG12622
Corresponding_CDS_historyCBG12622:bp194
CBG12622:bp255
Corresponding_transcriptCBG12622.1
Other_sequenceEY468260.1
ACC33573_1
Experimental_infoExpr_patternExpr1065487
Microarray_resultsGPL8303_CB6_WBGene00033540_A
GPL8303_CB6_WBGene00033540_B
GPL14143_CBG12622_1098-1157_0.887_12_C
GPL14143_CBG12622_1235-1294_0.900_6_A
GPL14143_CBG12622_1496-1555_0.923_4_B
MethodGene