WormBase Tree Display for Gene: WBGene00056204

WBGene00056204 SMap: S_parent: Sequence: Crem_Contig4
  Identity: Version: 3
    Name: CGC_name: Cre-unc-87 From_analysis: Inferred_from_orthology
      Sequence_name: CRE28495
      Molecular_name: CRE28495
        CRE28495.1
        RP05981
      Other_name: cr01.sctg6.wum.280
      Public_name: Cre-unc-87
    Species: Caenorhabditis remanei
    History: Version_change: 1 09 Nov 2007 10:19:26 WBPerson1847 Event: Created
        2 29 Nov 2007 17:00:42 WBPerson2970 Name_change: CGC_name: Cre-unc-87
        3 03 Jul 2008 11:45:02 WBPerson4055 Event: Imported: from NGASP
              Name_change: Sequence_name: CRE28495
                Other_name: cr01.sctg6.wum.280
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: unc
    RNASeq_FPKM: WBls:0000004 3.08392 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101882
        3.5396 From_analysis: RNASeq.remanei.WBls:0000004.control_mean
            RNASeq.remanei.WBls:0000004.control_median
        3.99528 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX101881
      WBls:0000024 (53)
      WBls:0000027 212.906 From_analysis: RNASeq.remanei.WBls:0000027.control_mean
        231.685 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101884
        244.599 From_analysis: RNASeq.remanei.WBls:0000027.control_median
        257.513 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101883
        275.905 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX101885
        86.5213 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX052082
      WBls:0000038 194.776 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX052083
        507.365 From_analysis: RNASeq.remanei.WBls:0000038.control_mean
        655.077 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101879
            RNASeq.remanei.WBls:0000038.control_median
        672.241 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX101880
      WBls:0000041 217.259 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191972
        272.693 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191973
        273.656 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191971
        392.242 From_analysis: RNASeq.remanei.WBls:0000041.control_median
        409.392 From_analysis: RNASeq.remanei.WBls:0000041.control_mean
        510.828 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191975
        585.985 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191974
        595.928 From_analysis: RNASeq.remanei.WBStrain00042077.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191976
      WBls:0000063 (12)
      WBls:0000101 380.041 From_analysis: RNASeq.remanei.total_over_all_stages.control_median
        423.914 From_analysis: RNASeq.remanei.total_over_all_stages.control_mean
    Ortholog (31)
    Paralog: WBGene00051281 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00052222 Caenorhabditis remanei From_analysis: TreeFam
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00056029 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00056433 Caenorhabditis remanei From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00060094 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00062365 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00064707 Caenorhabditis remanei From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Calponin family repeat and Calponin repeat. Is an ortholog of C. elegans unc-87. In C. elegans, unc-87 is involved in actin cytoskeleton organization and negative regulation of muscle filament sliding. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CRE28495
    Corresponding_transcript: CRE28495.1
    Other_sequence: PVC00102_1
      HG08291
      MIC01867_1
      AS00053
      TCC02552_1
      MJ04069
      MI02710
      HC06216
      EX915510.1
      PE00222
      CRC09263_1
      GR14178
      HG09522
      MAC00658_1
      MA00603
      MJ02935
      HC02273
      MJC00733_1
      ACC06776_1
      HC01641
      HSC01090_1
      GO239020.1
      TM01930
      MIC00734_1
      EH005159.1
      Acan_isotig08718
      MIC00003_1
      MJ01980
      MI01120
      SSC05918_1
      HCC10408_1
      MIC01560_1
      AS00055
      FC816270.1
      SSC02437_1
      CR05911
      HSC00784_1
      PT01707
      CV199182.1
      FC810989.1
      Dviv_isotig23968
      MHC11104_1
      MI02660
      MI00951
      HC01069
      MJ00070
      MJ02455
      MA00028
      BU086968.1
      XIC05146_1
      MHC05426_1
      MHC05534_1
      MHC00493_1
      GRC00426_2
      AIC00168_1
      MAC01655_1
      MJ02315
      RS06369
      MJC01513_1
      MIC04323_1
      MIC05148_1
      ES880518.1
      FK808749.1
      Name_isotig01300
      HG09113
      XI02434
      FK809306.1
      MA00589
      MH01166
      HG03517
      MIC03107_1
      GO249730.1
      HCC00207_1
      MJ02513
      MIC05016_1
      FG589667.1
      PVC00485_1
      FK800108.1
      AS09084
      MIC00644_1
      EG025382.1
      BXC00115_1
      MAC01617_1
      EX546914.1
      MA00550
      MJC00863_1
      Acan_isotig08457
      MI04867
      MA01485
      HGC01539_1
      FF678637.1
      HSC00292_1
      GO249969.1
      HG00103
      HC01902
      AY672636.1
      PT03149
      FK801064.1
      AS09275
      AE03678
      MI02661
      XI01192
      AS00759
      GO249963.1
      PT02626
      PEC00079_1
      MJC02562_1
      OOC00617_1
      MH07851
      HG00679
      FG589660.1
      HG04873
      MJ01830
      MA02389
      MA01983
      HCC11214_1
      MH08479
      MC02274
      BE225554.1
      AW506231.1
      HCC10204_1
      MIC04032_1
      AYC02943_1
      MI05593
      CV198866.1
      Hbac_isotig01897
      BE217693.1
      MJ00891
      MH02769
      GRC00426_1
      TDC01741_1
      BM880497.1
      MHC00449_1
      MH04227
      MHC09456_1
      MIC00070_3
      BMC04954_1
      MIC04727_1
      Tcol_isotig12068
      CV199495.1
      BE225421.1
      HGC03128_1
      MI01119
      FC810821.1
      HGC01686_1
      MP01559
      FG589562.1
      MC03633
      BU088796.1
      HGC05732_1
      MJ00871
      HSC00238_1
      CB036923.1
      HS00465
      FK808362.1
      Tcol_isotig23397
      MIC04521_1
      EX537605.1
      MI02714
      Tcol_isotig22780
      EX014260.1
      FG589393.1
      HBC01096_1
      MI05223
      GU130147.1
      FK802841.1
      CSC00297_1
      XIC01898_1
      CJC02502_1
      MA00026
      SS01345
      MJC00694_1
      HC06121
      HS01497
      MIC00003_2
      FC816456.1
      CJC13545_1
      AM743916.1
      AF193869.1
      GO238938.1
      AE00559
      ZPC00021_1
      TS02030
      JI171444.1
      EX564251.1
      AW505927.1
      JO468148.1
      MA00601
      BXC00964_1
      MJ00388
      PTC02148_1
      JI169129.1
      MA02343
      MA01219
      XIC01230_1
      MI02709
      MI05073
      CGC01139_1
      EH005541.1
      CJC10609_1
      CR01634
      MH07834
      MH07441
      AW505813.1
      FK803754.1
      BU586937.1
      TX00515
      BE225503.1
      MJ00222
      AS00625
      EX555958.1
      TCC00753_1
      MAC01226_1
      MJC01083_1
      MJ02987
      HBC24237_1
      BUC01226_1
      AYC04590_1
      JO468130.1
      PTC01110_1
      EX552621.1
      HS01409
      EX539907.1
      ZP00065
      CV201014.1
      MH04465
      BMC11213_1
      AS00928
      OOC00666_1
      BF118490.1
      HGC03935_1
      CV200932.1
      PPC07549_1
      SR00848
      OOC00248_1
      MJC03387_1
      MA02120
      MJ03135
      TMC01672_1
      OOC01006_1
      HG09356
      FK805252.1
      TX00327
      CV200774.1
      MI01003
      MI01121
      MH04466
      ALC00970_1
      Tcol_isotig12069
      MIC03737_1
      GR367759.1
      MA01353
      MI04933
      AS09218
      ES742885.1
      FD516129.1
      MHC12537_1
      RSC04225_1
      EX914326.1
      GRC00267_1
      MJ02358
      MHC03385_1
      MAC00014_1
      CJC00033_1
      TSC02655_1
      XIC00246_1
      FF678909.1
      U01099.1
      EX566922.1
      MJC01929_1
      MI05230
      MJ02946
      MC01001
      MI04828
      XI01502
      HG08561
      ODC00008_1
      MJ00073
      HS00679
      AS09189
      MH02714
      TCC00899_1
      MAC00014_2
      OVC07994_1
      MH02803
      RSC01186_1
      EL887774.1
      MJ03024
      MIC00070_2
      MJC01406_1
      MAC01306_1
      GR13363
      ACC20339_1
      MJ00315
      OOC00600_1
      EX915931.1
      MAC01318_1
      HC02399
      MA00602
      MAC02906_1
      HS00461
      GO238987.1
      MH08613
      MAC00277_1
      MIC03833_1
      MAC00529_1
      MIC03611_1
      AS02967
      CBC08878_1
      MI04894
      FF679050.1
      FC541802.1
      MJ03306
      MIC04168_1
      SRC00371_1
      MH02805
      MA02369
      BE239070.1
      PSC04739_1
      HGC01263_1
      MH07589
      FK802093.1
      MIC04342_1
      HG09473
      MIC00928_1
      MI04438
      HG08728
      FC811664.1
      MJ00878
      TLC00171_1
      MI01122
      AS09125
      AJ277868.1
      ASC06168_1
      MI04771
      MJ02039
      EX553739.1
      MH08835
      MI05834
      GO249388.1
      FD515584.1
      FC818468.1
      FK810000.1
      HC02297
      MHC06961_1
      NB06669
      Tcir_isotig09157
      SS02535
      MHC03570_1
      MI02605
      ACC03529_1
      MJ03318
      HC02417
      Tcir_isotig21483
      EH005551.1
      HS01219
      EH005616.1
      MHC03695_1
      MA00588
      FD517619.1
      GO238942.1
      AW505731.1
      MIC03926_1
      FC817232.1
      NAC01533_1
      FK804633.1
      MIC04996_1
      MJ00520
      ASC00804_1
      MA01612
      BE225388.1
      TCC00732_1
      MI03419
      CV201029.1
      BE239022.1
      BE191686.1
      FG589462.1
      MI05083
      MI04221
      FK802078.1
      MI05724
      Oden_isotig19311
      MPC00619_1
      MJ02951
      EE724189.1
      GE625944.1
      AS09312
      MI04839
      RSC00538_1
      MCC00890_1
      MJ02751
      AM158007.1
      MAC01423_1
      TX00169
      MI05515
      MH02804
      FK806828.1
      HG07699
      AM743386.1
      MI05074
      BE239170.1
      MI04859
      GW409578.1
      Tcir_isotig08503
      NAC02011_1
      AW506059.1
      TX00289
      MA02103
      FK809986.1
      EX539767.1
      EX916037.1
      MI04124
      CGC00577_1
      AS09334
      MJ00875
      NBC00078_1
      MJC01172_1
      GR13191
      BXC07124_1
      MJC03207_1
      MI00987
      CJC10161_1
      FK808176.1
      GRC00029_1
      EX915554.1
      MI02715
      ASC06516_1
      HC06245
      MJC00670_2
      EX566057.1
      EX549798.1
      GRC01098_1
      HBC00208_1
  Experimental_info: Expr_pattern: Expr1108517
    Microarray_results: GPL14146_CRE28495_1524-1583_0.953_1_A
    Expression_cluster: WBPaper00054996:activated_sperm_CRE
  Method: Gene