WormBase Tree Display for Gene: WBGene00131539

WBGene00131539 SMap: S_parent: Sequence: Cjap.Contig17065
  Identity: Version: 3
    Name: CGC_name: Cjp-vha-6 From_analysis: Inferred_from_orthology
      Sequence_name: CJA12335
      Molecular_name: CJA12335
        CJA12335.1
        JA41186
      Public_name: Cjp-vha-6
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:22 WBPerson4055 Event: Imported: NGASP import
        2 27 Jan 2009 12:59:25 WBPerson4055 Name_change: CGC_name: Cjp-vha-6
        3 29 Jul 2011 11:13:37 WBPerson4055 Event: Imported: Augustus import
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vha
    RNASeq_FPKM: WBls:0000004 66.4935 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 176.865 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 297.345 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
        301.587 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        305.83 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
      WBls:0000041 58.2464 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        67.6312 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        69.6256 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        72.7512 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        73.8785 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        75.0059 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        76.3045 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        83.0861 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        90.1988 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        93.8908 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
      WBls:0000101 112.075 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
        75.0059 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
    GO_annotation: 00196475
      00196476
      00196477
      00196478
    Ortholog: WBGene00006915 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00025861 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00053565 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00104585 Pristionchus pacificus From_analysis: Inparanoid_8
      WBGene00195042 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00230361 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g6988 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g1460 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g3745 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1481 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17312 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g1965 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g16241 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g12119 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g2707 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g17790 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00674.g13345 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00674.g13346 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-vha-6 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold285.g739 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00351.g9929 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_14188 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005348 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g12585 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g15940 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20330200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00110806 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00117953 Pristionchus pacificus From_analysis: WormBase-Compara
      chrII_pilon.g5939 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00205924 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00258603 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00289220 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00132495 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00136401 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00120256 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00133130 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00180595 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00212986 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in proton transmembrane transport. Predicted to be part of vacuolar proton-transporting V-type ATPase, V0 domain. Is an ortholog of C. elegans vha-6. In C. elegans, vha-6 is involved in nematode larval development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA12335
    Corresponding_transcript: CJA12335.1
    Other_sequence (67)
  Experimental_info: Expr_pattern: Expr1074512
    Microarray_results: GPL14145_CJA12335_1596-1655_0.448_360_C
      GPL14145_CJA12335_1715-1774_0.601_227_B
      GPL14145_CJA12335_1979-2038_0.462_334_A
  Method: Gene