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WormBase Tree Display for Gene: WBGene00136401

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Name Class

WBGene00136401SMapS_parentSequenceCjap.Contig18114
IdentityVersion2
NameCGC_nameCjp-vha-5From_analysisInferred_from_orthology
Sequence_nameCJA17196
Molecular_nameCJA17196
CJA17196.1
JA00071
Public_nameCjp-vha-5
SpeciesCaenorhabditis japonica
HistoryVersion_change129 Aug 2008 14:34:23WBPerson4055EventImportedfrom NGASP
Name_changeCGC_nameCjp-vha-5
229 Jul 2011 11:13:38WBPerson4055EventImportedAugustus import
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvha
RNASeq_FPKMWBls:000000456.6923From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:0000027116.241From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:0000038128.995From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
137.032From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
145.069From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004125.8985From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
44.2132From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
56.2253From_analysisRNASeq.japonica.WBls:0000041.control_mean
56.9703From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
57.0301From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
59.0684From_analysisRNASeq.japonica.WBls:0000041.control_median
61.1066From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
65.8079From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
68.2542From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
70.5213From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
WBls:000010161.1066From_analysisRNASeq.japonica.total_over_all_stages.control_median
68.9846From_analysisRNASeq.japonica.total_over_all_stages.control_mean
GO_annotation00200376
00200377
00200378
00200379
OrthologWBGene00006914Caenorhabditis elegansFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00024808Caenorhabditis briggsaeFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00059467Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00075032Caenorhabditis remaneiFrom_analysisOMA
TreeFam
WormBase-Compara
WBGene00150020Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00190073Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00224112Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g8573Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6657Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g14172Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g7039Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g7162Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g7848Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g12831Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g8606Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g28872Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g12940Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00088.g3984Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00263.g8085Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-vha-5Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g7551Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00052.g2640Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_16366Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_014710Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g12466Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g14411Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40113100Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11037Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00240694Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00280902Pristionchus pacificusFrom_analysisWormBase-Compara
WBGene00267550Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00289220Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00131539Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00132495Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00120256Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00133130Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00180595Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00212986Caenorhabditis japonicaFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in proton transmembrane transport. Predicted to be part of vacuolar proton-transporting V-type ATPase, V0 domain. Is an ortholog of C. elegans vha-5. In C. elegans, vha-5 is involved in several processes, including collagen and cuticulin-based cuticle development; exosomal secretion; and multicellular organismal-level water homeostasis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA17196
Corresponding_transcriptCJA17196.1
Other_sequence (108)
Experimental_infoExpr_patternExpr1071000
Microarray_resultsGPL14145_CJA17196_2022-2081_0.894_5_C
GPL14145_CJA17196_2227-2286_0.706_217_B
GPL14145_CJA17196_2540-2599_0.688_242_A
MethodGene