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WormBase Tree Display for Gene: WBGene00024808

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Name Class

WBGene00024808SMapS_parentSequencecb25.fpc0039
IdentityVersion2
NameCGC_nameCbr-vha-5From_analysisInferred_from_orthology
Sequence_nameCBG01592
Molecular_nameCBG01592
CBG01592.1
CBP06111
Other_nameCBG_01592Accession_evidenceNDBHE601298
Public_nameCbr-vha-5
DB_infoDatabaseNDBlocus_tagCBG_01592
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:54WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-vha-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvha
RNASeq_FPKMWBls:000000250.8451From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
56.2453From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
58.9281From_analysisRNASeq.briggsae.WBls:0000002.control_mean
69.694From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
26.4359From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
50.8051From_analysisRNASeq.briggsae.WBls:0000002.control_mean
53.5452From_analysisRNASeq.briggsae.WBls:0000002.control_median
WBls:00000030From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
3.94208From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
7.88415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
4.8538From_analysisRNASeq.briggsae.WBls:0000003.control_mean
6.67725From_analysisRNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
WBls:000000463.7593From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
64.4486From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
65.1379From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
62.4944From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
63.9046From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
64.3694From_analysisRNASeq.briggsae.WBls:0000004.control_mean
66.551From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:000002713.8975From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
156.873From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
41.905From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
70.8918From_analysisRNASeq.briggsae.WBls:0000027.control_mean
59.4236From_analysisRNASeq.briggsae.WBls:0000027.control_median
72.4044From_analysisRNASeq.briggsae.WBls:0000027.control_mean
76.9422From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:0000035135.167From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:0000038101.416From_analysisRNASeq.briggsae.WBls:0000038.control_mean
154.706From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
74.2763From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
81.1924From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
88.3404From_analysisRNASeq.briggsae.WBls:0000038.control_median
95.4884From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
WBls:000004134.0416From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
42.5054From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
47.5694From_analysisRNASeq.briggsae.WBls:0000041.control_median
52.6334From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
53.7768From_analysisRNASeq.briggsae.WBls:0000041.control_mean
85.9267From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
37.4151From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
53.9568From_analysisRNASeq.briggsae.WBls:0000041.control_mean
71.2189From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
WBls:000006332.6064From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
35.4468From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
36.8986From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
37.4076From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
39.3579From_analysisRNASeq.briggsae.WBls:0000063.control_mean
54.4299From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
37.1531From_analysisRNASeq.briggsae.WBls:0000063.control_median
43.4852From_analysisRNASeq.briggsae.WBls:0000063.control_mean
64.1221From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010156.2453From_analysisRNASeq.briggsae.total_over_all_stages.control_median
69.0382From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
63.1269From_analysisRNASeq.briggsae.total_over_all_stages.control_median
65.2071From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00128196
00128197
00128198
00128199
Ortholog (36)
ParalogWBGene00025861Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00026344Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029076Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in proton transmembrane transport. Predicted to be part of vacuolar proton-transporting V-type ATPase, V0 domain. Is an ortholog of C. elegans vha-5. In C. elegans, vha-5 is involved in several processes, including collagen and cuticulin-based cuticle development; exosomal secretion; and multicellular organismal-level water homeostasis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG01592
Corresponding_CDS_historyCBG01592:bp194
CBG01592:bp255
Corresponding_transcriptCBG01592.1
Other_sequence (118)
Experimental_infoExpr_patternExpr1066029
Microarray_resultsGPL8303_CB6_WBGene00024808_A
GPL8303_CB6_WBGene00024808_B
GPL14143_CBG01592_2079-2138_0.908_12_C
GPL14143_CBG01592_2272-2331_0.918_9_B
GPL14143_CBG01592_2586-2645_0.959_1_A
MethodGene