WormBase Tree Display for Gene: WBGene00137549

WBGene00137549 SMap: S_parent: Sequence: Cjap.Contig12575
  Identity: Version: 3
    Name: CGC_name: Cjp-ttc-4 From_analysis: Inferred_from_orthology
      Sequence_name: CJA18345
      Molecular_name: CJA18345
        CJA18345.1
        JA09029
      Public_name: Cjp-ttc-4
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:23 WBPerson4055 Event: Imported: NGASP import
        2 29 Jul 2011 11:13:38 WBPerson4055 Event: Imported: Augustus import
        3 06 Sep 2017 09:35:13 WBPerson2970 Name_change: CGC_name: Cjp-ttc-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ttc
    RNASeq_FPKM: WBls:0000004 23.531 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 22.5135 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 21.6811 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        22.9 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        24.1188 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 10.7153 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        13.3203 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        13.4747 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        13.618 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        26.5791 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        33.9255 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        39.5402 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        53.7567 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        61.4893 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        65.4894 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
      WBls:0000101 22.5135 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        27.9422 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    Ortholog: WBGene00015916 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00025500 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00057325 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00139373 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00153413 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00222534 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g12578 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g2462 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g5459 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1548 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g12292 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g11851 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g11300 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g21453 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9195 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g7101 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-C17G10.2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g11365 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00331.g9555 Caenorhabditis sinica From_analysis: WormBase-Compara
      GCK72_006075 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02594 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g6488 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20110710 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g4553 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00248123 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00273592 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00262260 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00290896 Trichuris muris From_analysis: WormBase-Compara
    Paralog: WBGene00121037 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00122646 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00129537 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00134316 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00138144 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00178791 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00208667 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00210287 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00216349 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Cns1/TTC4 Wheel domain and Tetratricopeptide-like helical domain superfamily. Is an ortholog of C. elegans ttc-4. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA18345
    Corresponding_transcript: CJA18345.1
    Other_sequence (27)
  Experimental_info: Expr_pattern: Expr1078070
    Microarray_results: GPL14145_CJA18345_1161-1220_0.887_36_C
      GPL14145_CJA18345_117-176_0.784_137_B
      GPL14145_CJA18345_17-76_0.797_118_A
  Method: Gene