WormBase Tree Display for Variation: WBVar00007029

WBVar00007029 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00007029
    Other_name: cbs5290
      cb5290 Paper_evidence: WBPaper00055507
    HGVSg: chrIII:g.10264433A>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0201
    Flanking_sequences: attcttttaagccatatttttccag aaacgacaagatgggtgattacgtg
    Mapping_target: cb25.fpc0201
    Type_of_mutation: Substitution: T A
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: RAATTY AcsI, ApoI, XapI 274 223 199 125 103 46 23 7
        TTTAAA AhaIII, DraI 793 172 30 5
        CATG CviAII, FatI, HpyCH4I, Hsp92II, NlaIII 565 153 107 98 65 12
        TCNNGA Hpy178III, Hpy188III 469 156 148 83 56 47 41
        GTNNAC Hpy8I 501 252 247
        ACGT HpyCH4IV, MaeII, TaiI, TscI 280 273 199 128 70 50
        TTAA MseI, Tru1I, Tru9I 387 213 134 90 87 39 30 16 4
        GTTTAAAC MssI, PmeI 995 5
        AATT Sse9I, TasI, Tsp509I, TspEI 223 199 125 106 86 81 31 29 23 21 21 17 17 14 7
      Polymorphic_strain_digest: RAATTY AcsI, ApoI, XapI 242 223 199 125 103 46 32 23 7
        TTTAAA AhaIII, DraI 798 172 30
        CATG CviAII, FatI, HpyCH4I, Hsp92II, NlaIII 565 153 107 98 77
        TCNNGA Hpy178III, Hpy188III 348 162 156 148 83 56 47
        GTNNAC Hpy8I 748 252
        ACGT HpyCH4IV, MaeII, TaiI, TscI 280 273 199 178 70
        TTAA MseI, Tru1I, Tru9I 387 213 134 94 87 39 30 16
        GTTTAAAC MssI, PmeI 1000
        AATT Sse9I, TasI, Tsp509I, TspEI 223 199 125 106 86 81 32 29 23 21 20 17 17 14 7
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00029076
    Transcript: CBG06881a.1 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG06881a.1:c.-11T>A
        cDNA_position: 1
        Exon_number: 1/12
      CBG06881b.1 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG06881b.1:c.-11T>A
        cDNA_position: 1
        Exon_number: 1/12
      CBG06881c.1 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG06881c.1:c.-11T>A
        cDNA_position: 1
        Exon_number: 1/12
      CBG06881d.1 VEP_consequence: 5_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG06881d.1:c.-11T>A
        cDNA_position: 1
        Exon_number: 1/12
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP