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WormBase Tree Display for Variation: WBVar00009668

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Name Class

WBVar00009668EvidencePaper_evidenceWBPaper00037807
NamePublic_nameWBVar00009668
Other_namehaw33056
cewivar00143249
Y54G9A.3a.2:c.339+83T>A
Y54G9A.3a.1:c.339+83T>A
Y54G9A.3c.1:c.216+83T>A
Y54G9A.3b.1:c.327+83T>A
HGVSgCHROMOSOME_II:g.13708751T>A
Sequence_detailsSMapS_parentSequenceY54G9A
Flanking_sequencesatttttaaaacttaaaaaaaaaattaaaaaaaacgaaaaaaaccccacac
Mapping_targetY54G9A
Type_of_mutationSubstitutionTA
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
Natural_variant
OriginSpeciesCaenorhabditis elegans
StrainWBStrain00004600From_analysisMillion_mutation_project_reanalysis
WBStrain00004602From_analysisWGS_De_Bono
WGS_Hawaiian_Waterston
Million_mutation_project_reanalysis
WBStrain00022850From_analysisWGS_De_Bono
Million_mutation_project_reanalysis
LaboratoryRW
AX
PersonWBPerson1562
AnalysisWGS_Hawaiian_Waterston
WGS_De_Bono
Million_mutation_project_reanalysis
HistoryAcquires_mergeWBVar01317741
WBVar01382680
StatusLive
AffectsGeneWBGene00002235
TranscriptY54G9A.3a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G9A.3a.1:c.339+83T>A
Intron_number3/9
Y54G9A.3b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G9A.3b.1:c.327+83T>A
Intron_number2/7
Y54G9A.3c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G9A.3c.1:c.216+83T>A
Intron_number2/8
Y54G9A.3a.2VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScY54G9A.3a.2:c.339+83T>A
Intron_number4/10
ReferenceWBPaper00037807
Remark[20081124 db] this Variation was previously named hw33056
MethodWGS_Hawaiian_Waterston