WormBase Tree Display for Variation: WBVar00009668
expand all nodes | collapse all nodes | view schema
WBVar00009668 | Evidence | Paper_evidence | WBPaper00037807 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00009668 | |||
Other_name | haw33056 | ||||
cewivar00143249 | |||||
Y54G9A.3a.2:c.339+83T>A | |||||
Y54G9A.3a.1:c.339+83T>A | |||||
Y54G9A.3c.1:c.216+83T>A | |||||
Y54G9A.3b.1:c.327+83T>A | |||||
HGVSg | CHROMOSOME_II:g.13708751T>A | ||||
Sequence_details | SMap | S_parent | Sequence | Y54G9A | |
Flanking_sequences | atttttaaaacttaaaaaaaaaatt | aaaaaaaacgaaaaaaaccccacac | |||
Mapping_target | Y54G9A | ||||
Type_of_mutation | Substitution | T | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004600 | From_analysis | Million_mutation_project_reanalysis | ||
WBStrain00004602 | From_analysis | WGS_De_Bono | |||
WGS_Hawaiian_Waterston | |||||
Million_mutation_project_reanalysis | |||||
WBStrain00022850 | From_analysis | WGS_De_Bono | |||
Million_mutation_project_reanalysis | |||||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
Million_mutation_project_reanalysis | |||||
History | Acquires_merge | WBVar01317741 | |||
WBVar01382680 | |||||
Status | Live | ||||
Affects | Gene | WBGene00002235 | |||
Transcript | Y54G9A.3a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G9A.3a.1:c.339+83T>A | ||||
Intron_number | 3/9 | ||||
Y54G9A.3b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G9A.3b.1:c.327+83T>A | ||||
Intron_number | 2/7 | ||||
Y54G9A.3c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G9A.3c.1:c.216+83T>A | ||||
Intron_number | 2/8 | ||||
Y54G9A.3a.2 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y54G9A.3a.2:c.339+83T>A | ||||
Intron_number | 4/10 | ||||
Reference | WBPaper00037807 | ||||
Remark | [20081124 db] this Variation was previously named hw33056 | ||||
Method | WGS_Hawaiian_Waterston |