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WormBase Tree Display for Variation: WBVar00011259

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Name Class

WBVar00011259EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00011259
Other_namecbs9408
cb9408Paper_evidenceWBPaper00055507
HGVSgchrIV:g.5984143C>A
Sequence_detailsSMapS_parentSequencecb25.fpc4152
Flanking_sequencesgaatggaaacagaaggcttattggagtgaaaaaagtagaagagatggttt
Mapping_targetcb25.fpc4152
Type_of_mutationSubstitutionGT
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestRAATTYAcsI, ApoI, XapI280 250 104 86 58 58 49 40 37 27 11
TTTAAAAhaIII, DraI391 336 273
CACHindI148 119 74 73 64 53 52 44 44 43 39 36 31 31 28 25 25 21 15 13 9 5 4 2 2
TCNNGAHpy178III, Hpy188III670 226 53 51
TTAAMseI, Tru1I, Tru9I323 317 274 42 32 12
AATTSse9I, TasI, Tsp509I, TspEI261 183 104 67 58 45 44 41 40 26 24 23 20 19 14 13 11 7
Polymorphic_strain_digestRAATTYAcsI, ApoI, XapI530 103 86 58 58 49 40 38 27 11
TTTAAAAhaIII, DraI727 273
CACHindI148 119 88 74 73 64 53 44 44 43 39 31 31 28 25 25 21 15 13 9 5 4 2 2
TCNNGAHpy178III, Hpy188III504 226 166 53 51
TTAAMseI, Tru1I, Tru9I322 294 256 43 32 23 18 12
AATTSse9I, TasI, Tsp509I, TspEI261 183 103 67 58 45 44 41 40 26 24 23 20 19 14 14 11 7
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00039055
TranscriptCBG19929a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG19929a.1:c.-2-5987G>T
Intron_number1/10
CBG19929b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG19929b.1:c.86-5987G>T
Intron_number1/8
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP