WormBase Tree Display for Variation: WBVar00017789

WBVar00017789 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00017789
    Other_name: cbs16172
      cb16172 Paper_evidence: WBPaper00055507
    HGVSg: chrIV:g.12106406A>G
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0081
    Flanking_sequences: aagaagacatgtcgacggacatcta aacatgcaagaattttaaagacaga
    Mapping_target: cb25.fpc0081
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CTAG BfaI, MaeI, XspI 865 135
        TCNNGA Hpy178III, Hpy188III 792 172 36
        TCTAGA XbaI 1000
      Polymorphic_strain_digest: CTAG BfaI, MaeI, XspI 503 362 135
        TCNNGA Hpy178III, Hpy188III 503 289 172 36
        TCTAGA XbaI 504 496
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00027093
    Transcript: CBG04423a.1 VEP_consequence: splice_region_variant,intron_variant
        VEP_impact: LOW
        HGVSc: CBG04423a.1:c.4876-4T>C
        Intron_number: 9/16
      CBG04423b.1 VEP_consequence: splice_region_variant,intron_variant
        VEP_impact: LOW
        HGVSc: CBG04423b.1:c.4903-4T>C
        Intron_number: 9/16
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: CrossMatch, Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP