WormBase Tree Display for Variation: WBVar00040364

WBVar00040364 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00040364
    Other_name: cbs30510
      cb30510 Paper_evidence: WBPaper00055507
    HGVSg: chrV:g.18801914G>T
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0129
    Flanking_sequences: gcatttacggtattacggtagttaa acagatttttttcaaaatttgaaaa
    Mapping_target: cb25.fpc0129
    Type_of_mutation: Substitution: C T
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 892 108
        TCGA EsaBC3I, TaqI, TthHB8I 617 170 87 70 37 11 8
        AATT Sse9I, TasI, Tsp509I, TspEI 162 125 87 82 68 57 47 47 47 43 40 39 32 32 30 24 20 10 8
      Polymorphic_strain_digest: TTCGAA AsuII, Bpu14I, BsiCI, Bsp119I, BspT104I, BstBI, Csp45I, LspI, NspV, SfuI 512 380 108
        TCGA EsaBC3I, TaqI, TthHB8I 513 170 104 87 70 37 11 8
        AATT Sse9I, TasI, Tsp509I, TspEI 162 125 89 87 82 68 47 47 47 43 40 39 32 30 24 20 10 8
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00027983
    Transcript: CBG05555a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555a.1:c.4806+61C>A
        Intron_number: 21/34
      CBG05555b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555b.1:c.4665+61C>A
        Intron_number: 19/32
      CBG05555c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555c.1:c.4806+61C>A
        Intron_number: 20/32
      CBG05555d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555d.1:c.4665+61C>A
        Intron_number: 19/30
      CBG05555f.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555f.1:c.*374+61C>A
        Intron_number: 20/30
      CBG05555f.2 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555f.2:c.*374+61C>A
        Intron_number: 20/30
      CBG05555f.3 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555f.3:c.*374+61C>A
        Intron_number: 20/22
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP