WormBase Tree Display for Variation: WBVar00049414
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WBVar00049414 | Evidence | Paper_evidence | WBPaper00030778 | ||
---|---|---|---|---|---|
WBPaper00055507 | |||||
Name | Public_name | WBVar00049414 | |||
Other_name | cbs35788 | ||||
cb35788 | Paper_evidence | WBPaper00055507 | |||
HGVSg | chrIII:g.11482891A>G | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc4154 | |
Flanking_sequences | ttaagagggggacaggggaaccttg | tggctggagggtcaaaaacaaaatt | |||
Mapping_target | cb25.fpc4154 | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP (2) | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis briggsae | |||
Strain | WBStrain00041077 | ||||
Laboratory | CP | ||||
Person | WBPerson3706 | ||||
WBPerson227 | |||||
WBPerson225 | |||||
Status | Live | ||||
Affects | Gene | WBGene00039233 | |||
Transcript | CBG20190a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | CBG20190a.1:c.280-2275T>C | ||||
Intron_number | 2/12 | ||||
CBG20190b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG20190b.1:c.280-2275T>C | ||||
Intron_number | 2/15 | ||||
CBG20190c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG20190c.1:c.280-2275T>C | ||||
Intron_number | 2/14 | ||||
CBG20190d.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG20190d.1:c.484-2275T>C | ||||
Intron_number | 2/12 | ||||
CBG20190e.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG20190e.1:c.484-2275T>C | ||||
Intron_number | 2/15 | ||||
CBG20190f.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG20190f.1:c.484-2275T>C | ||||
Intron_number | 2/14 | ||||
Reference | WBPaper00030778 | ||||
WBPaper00055507 | |||||
Remark | Predicted by: Polybayes, ssaha-SNP v2.0 | ||||
This SNP was observed in 2 sequencing read(s) | |||||
Method | SNP |