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WormBase Tree Display for Variation: WBVar00049414

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Name Class

WBVar00049414EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00049414
Other_namecbs35788
cb35788Paper_evidenceWBPaper00055507
HGVSgchrIII:g.11482891A>G
Sequence_detailsSMapS_parentSequencecb25.fpc4154
Flanking_sequencesttaagagggggacaggggaaccttgtggctggagggtcaaaaacaaaatt
Mapping_targetcb25.fpc4154
Type_of_mutationSubstitutionAG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLP (2)
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00039233
TranscriptCBG20190a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG20190a.1:c.280-2275T>C
Intron_number2/12
CBG20190b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG20190b.1:c.280-2275T>C
Intron_number2/15
CBG20190c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG20190c.1:c.280-2275T>C
Intron_number2/14
CBG20190d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG20190d.1:c.484-2275T>C
Intron_number2/12
CBG20190e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG20190e.1:c.484-2275T>C
Intron_number2/15
CBG20190f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG20190f.1:c.484-2275T>C
Intron_number2/14
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: Polybayes, ssaha-SNP v2.0
This SNP was observed in 2 sequencing read(s)
MethodSNP