WormBase Tree Display for Variation: WBVar00049419

WBVar00049419 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00049419
    Other_name: cbs35789
      cb35789 Paper_evidence: WBPaper00055507
    HGVSg: chrIII:g.11482795T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc4154
    Flanking_sequences: ccttattcgaaaacatattagaaat gaaaaatggagcaaaaagggaatgg
    Mapping_target: cb25.fpc4154
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CCNNGG BsaJI, BseDI, BssECI, SecI 639 247 58 46 10
        CGRYCG BsaOI, Bsh1285I, BsiEI, BstMCI, McrI 796 204
        CCWWGG BssT1I, Eco130I, EcoT14I, ErhI, StyI 649 293 58
        TCGA EsaBC3I, TaqI, TthHB8I 476 276 207 41
        CAC HindI 194 180 130 97 44 44 44 42 37 35 32 30 24 18 12 10 8 7 2 2 2 2 2 2
        AATT Sse9I, TasI, Tsp509I, TspEI 176 165 141 95 81 72 66 52 51 46 37 18
      Polymorphic_strain_digest: CCNNGG BsaJI, BseDI, BssECI, SecI 404 247 235 58 46 10
        CGRYCG BsaOI, Bsh1285I, BsiEI, BstMCI, McrI 1000
        CCWWGG BssT1I, Eco130I, EcoT14I, ErhI, StyI 404 293 245 58
        TCGA EsaBC3I, TaqI, TthHB8I 458 276 207 41 18
        CAC HindI 180 142 130 97 52 44 44 44 42 37 35 32 30 24 18 12 10 8 7 2 2 2 2 2 2
        AATT Sse9I, TasI, Tsp509I, TspEI 227 165 141 81 72 66 58 52 46 37 37 18
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00039233
    Transcript: CBG20190a.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG20190a.1:c.280-2179A>G
        Intron_number: 2/12
      CBG20190b.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG20190b.1:c.280-2179A>G
        Intron_number: 2/15
      CBG20190c.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG20190c.1:c.280-2179A>G
        Intron_number: 2/14
      CBG20190d.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG20190d.1:c.484-2179A>G
        Intron_number: 2/12
      CBG20190e.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG20190e.1:c.484-2179A>G
        Intron_number: 2/15
      CBG20190f.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG20190f.1:c.484-2179A>G
        Intron_number: 2/14
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
    This SNP was observed in 2 sequencing read(s)
  Method: SNP