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WormBase Tree Display for Variation: WBVar00049429

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Name Class

WBVar00049429EvidencePaper_evidenceWBPaper00030778
WBPaper00055507
NamePublic_nameWBVar00049429
Other_namecbs35791
cb35791Paper_evidenceWBPaper00055507
HGVSgchrIII:g.11482498G>T
Sequence_detailsSMapS_parentSequencecb25.fpc4154
Flanking_sequencesaagacgagataaattaactcaagtcgtcgatgcgcgaaaaatgcgaaaaa
Mapping_targetcb25.fpc4154
Type_of_mutationSubstitutionGT
SeqStatusSequenced
Variation_type (4)
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00039233
TranscriptCBG20190a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG20190a.1:c.280-1882C>A
Intron_number2/12
CBG20190b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG20190b.1:c.280-1882C>A
Intron_number2/15
CBG20190c.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG20190c.1:c.280-1882C>A
Intron_number2/14
CBG20190d.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG20190d.1:c.484-1882C>A
Intron_number2/12
CBG20190e.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG20190e.1:c.484-1882C>A
Intron_number2/15
CBG20190f.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG20190f.1:c.484-1882C>A
Intron_number2/14
ReferenceWBPaper00030778
WBPaper00055507
RemarkPredicted by: Polybayes, ssaha-SNP v1.0, ssaha-SNP v2.0
This SNP was observed in 2 sequencing read(s)
MethodSNP