WormBase Tree Display for Variation: WBVar00052963
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| WBVar00052963 | Name | Public_name | WBVar00052963 | ||
|---|---|---|---|---|---|
| Other_name | pas3758 | ||||
| haw41715 | |||||
| haw142336 | |||||
| cewivar00104682 | |||||
| Y55D5A.5c.1:c.2946C>G | |||||
| Y55D5A.5a.1:c.2772-1013C>G | |||||
| Y55D5A.5e.1:c.2544-1013C>G | |||||
| Y55D5A.5f.1:c.342-1013C>G | |||||
| Y55D5A.5d.1:c.2631-1013C>G | |||||
| CE50204:p.Arg982= | |||||
| HGVSg | CHROMOSOME_III:g.3007050G>C | ||||
| Sequence_details | SMap | S_parent | Sequence | Y55D5A | |
| Flanking_sequences | gaattccatgaattccaccaaggct | cgccccaaaatctgacgtttttgcc | |||
| Mapping_target | Y55D5A | ||||
| Type_of_mutation | Substitution | G | C | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (32) | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson6900 | |||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Pasadena_Quinlan | |||||
| History | Acquires_merge | WBVar00562201 | |||
| WBVar01260942 | |||||
| WBVar00098899 | |||||
| WBVar01329477 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00000898 | |||
| Transcript | Y55D5A.5e.1 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5e.1:c.2544-1013C>G | ||||
| Intron_number | 9/14 | ||||
| Y55D5A.5f.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5f.1:c.342-1013C>G | ||||
| Intron_number | 2/7 | ||||
| Y55D5A.5a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5a.1:c.2772-1013C>G | ||||
| Intron_number | 12/18 | ||||
| Y55D5A.5c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | Y55D5A.5c.1:c.2946C>G | ||||
| HGVSp | CE50204:p.Arg982= | ||||
| cDNA_position | 3109 | ||||
| CDS_position | 2946 | ||||
| Protein_position | 982 | ||||
| Exon_number | 14/21 | ||||
| Codon_change | cgC/cgG | ||||
| Amino_acid_change | R | ||||
| Y55D5A.5d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | Y55D5A.5d.1:c.2631-1013C>G | ||||
| Intron_number | 10/15 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw41715 | ||||
| Method | WGS_Hawaiian_Waterston |
