WormBase Tree Display for Variation: WBVar00065193
expand all nodes | collapse all nodes | view schema
| WBVar00065193 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| WBPaper00055507 | ||||||
| Name | Public_name | WBVar00065193 | ||||
| Other_name | cbs41294 | |||||
| cb41294 | Paper_evidence | WBPaper00055507 | ||||
| HGVSg | chrII:g.781517T>C | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0022b | ||
| Flanking_sequences | aaatcgcctcaaaataaagaaattt | ggcttgaaattcgagaaaaattggt | ||||
| Mapping_target | cb25.fpc0022b | |||||
| Type_of_mutation | Substitution | T | C | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | CCGC | AciI | 707 293 | ||
| GTAC | AfaI, Csp6I, RsaI | 617 160 156 67 | ||||
| CTAG | BfaI, MaeI, XspI | 916 84 | ||||
| CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 933 67 | ||||
| CTNAG | BstDEI, DdeI | 320 286 173 99 79 43 | ||||
| RGCY | CviJI, CviTI | 324 177 108 95 44 43 43 41 24 22 22 21 21 10 5 | ||||
| CAC | HindI | 531 132 84 83 36 30 27 25 24 18 6 2 2 | ||||
| TTAA | MseI, Tru1I, Tru9I | 208 196 151 145 93 80 59 23 22 19 4 | ||||
| Polymorphic_strain_digest | CCGC | AciI | 550 293 157 | |||
| GTAC | AfaI, Csp6I, RsaI | 777 156 67 | ||||
| CTAG | BfaI, MaeI, XspI | 462 347 107 84 | ||||
| CCNNNNNNNGG | Bsc4I, BseLI, BsiYI, BslI | 742 191 67 | ||||
| CTNAG | BstDEI, DdeI | 320 286 272 79 43 | ||||
| RGCY | CviJI, CviTI | 324 177 108 95 64 44 43 41 24 22 22 21 10 5 | ||||
| CAC | HindI | 490 132 84 83 41 36 30 27 25 24 18 6 2 2 | ||||
| TTAA | MseI, Tru1I, Tru9I | 208 189 151 145 93 80 59 23 22 19 7 4 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00024221 | ||||
| Transcript | CBG00906.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | |||||
| HGVSc | CBG00906.1:c.669-713T>C | |||||
| Intron_number | 5/25 | |||||
| Reference | WBPaper00030778 | |||||
| WBPaper00055507 | ||||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
