WormBase Tree Display for Variation: WBVar00088923

WBVar00088923 Evidence: Paper_evidence: WBPaper00003903
  Name: Public_name: mg280
    Other_name: ZK1290.2a.1:c.86+68_854del
      ZK1290.2b.1:c.-264+68_545del
    HGVSg: CHROMOSOME_II:g.7549511_7550816del
  Sequence_details: SMap: S_parent: Sequence: ZK1290
    Flanking_sequences: ccgttcaattttgaactgtaggagtgaact atactcggaaaataatattccgcaactaga
    Mapping_target: ZK1290
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00006655
      WBStrain00007901
      WBStrain00027519
      WBStrain00049490
      WBStrain00055118
      WBStrain00055121
    Laboratory: GR
      MT
    Status: Live
  Affects: Gene: WBGene00197293
      WBGene00006600
    Transcript: ZK1290.2b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1290.2b.1:c.-264+68_545del
        cDNA_position: ?-875
        CDS_position: ?-545
        Protein_position: ?-182
        Intron_number: 1-6/11
        Exon_number: 2-7/12
      ZK1290.2a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1290.2a.1:c.86+68_854del
        cDNA_position: ?-877
        CDS_position: ?-854
        Protein_position: ?-285
        Intron_number: 2-7/12
        Exon_number: 3-8/13
      ZK1290.18 VEP_consequence: non_coding_transcript_exon_variant
        VEP_impact: MODIFIER
        cDNA_position: ?-74
        Exon_number: 1/1
    Interactor: WBInteraction000500144
      WBInteraction000502728
      WBInteraction000525337
      WBInteraction000537565
      WBInteraction000537566
      WBInteraction000541577
  Genetics: Interpolated_map_position: II 0.504577
    Mapping_data: In_multi_point: 4733
  Description (2)
  Disease_info: Models_disease: DOID:809
      DOID:1574
    Models_disease_in_annotation: WBDOannot00000681
      WBDOannot00000714
  Reference (41)
  Remark: Variation stub generated from the April 2021 NN VFP dataset.
    Variation stub/paper connection generated from the May 2021 NN VFP dataset.
    Created by WBPerson1983 from the NN_VFP_triage_pipeline
  Method: Deletion_allele