WormBase Tree Display for Variation: WBVar00088923
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WBVar00088923 | Evidence | Paper_evidence | WBPaper00003903 | ||
---|---|---|---|---|---|
Name | Public_name | mg280 | |||
Other_name | ZK1290.2a.1:c.86+68_854del | ||||
ZK1290.2b.1:c.-264+68_545del | |||||
HGVSg | CHROMOSOME_II:g.7549511_7550816del | ||||
Sequence_details | SMap | S_parent | Sequence | ZK1290 | |
Flanking_sequences | ccgttcaattttgaactgtaggagtgaact | atactcggaaaataatattccgcaactaga | |||
Mapping_target | ZK1290 | ||||
Type_of_mutation | Deletion | ||||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00006655 | ||||
WBStrain00007901 | |||||
WBStrain00027519 | |||||
WBStrain00049490 | |||||
WBStrain00055118 | |||||
WBStrain00055121 | |||||
Laboratory | GR | ||||
MT | |||||
Status | Live | ||||
Affects | Gene | WBGene00197293 | |||
WBGene00006600 | |||||
Transcript | ZK1290.2b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||
VEP_impact | HIGH | ||||
HGVSc | ZK1290.2b.1:c.-264+68_545del | ||||
cDNA_position | ?-875 | ||||
CDS_position | ?-545 | ||||
Protein_position | ?-182 | ||||
Intron_number | 1-6/11 | ||||
Exon_number | 2-7/12 | ||||
ZK1290.2a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | ZK1290.2a.1:c.86+68_854del | ||||
cDNA_position | ?-877 | ||||
CDS_position | ?-854 | ||||
Protein_position | ?-285 | ||||
Intron_number | 2-7/12 | ||||
Exon_number | 3-8/13 | ||||
ZK1290.18 | VEP_consequence | non_coding_transcript_exon_variant | |||
VEP_impact | MODIFIER | ||||
cDNA_position | ?-74 | ||||
Exon_number | 1/1 | ||||
Interactor | WBInteraction000500144 | ||||
WBInteraction000502728 | |||||
WBInteraction000525337 | |||||
WBInteraction000537565 | |||||
WBInteraction000537566 | |||||
WBInteraction000541577 | |||||
Genetics | Interpolated_map_position | II | 0.504577 | ||
Mapping_data | In_multi_point | 4733 | |||
Description | Phenotype (45) | ||||
Phenotype_not_observed (8) | |||||
Disease_info | Models_disease | DOID:809 | |||
DOID:1574 | |||||
Models_disease_in_annotation | WBDOannot00000681 | ||||
WBDOannot00000714 | |||||
Reference (41) | |||||
Remark | Variation stub generated from the April 2021 NN VFP dataset. | ||||
Variation stub/paper connection generated from the May 2021 NN VFP dataset. | |||||
Created by WBPerson1983 from the NN_VFP_triage_pipeline | |||||
Method | Deletion_allele |