WormBase Tree Display for Variation: WBVar00088946
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| WBVar00088946 | Evidence | Paper_evidence | WBPaper00027748 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Person_evidence | WBPerson272 | ||||||||
| Name | Public_name | mg348 | |||||||
| Other_name | F53B2.3.1:c.254G>T | ||||||||
| CE05917:p.Ala85Val | |||||||||
| HGVSg | CHROMOSOME_IV:g.12525207C>A | ||||||||
| Sequence_details | SMap | S_parent | Sequence | F53B2 | |||||
| Flanking_sequences | atctgaacatccagttgcattgcacgcctt | cggctggacactgaaattattgaaggtttt | |||||||
| Mapping_target | F53B2 | ||||||||
| Type_of_mutation | Substitution | G | A | Paper_evidence | WBPaper00027748 | ||||
| Person_evidence | WBPerson272 | ||||||||
| SeqStatus | Sequenced | ||||||||
| Variation_type | Allele | ||||||||
| Origin | Species | Caenorhabditis elegans | |||||||
| Strain | WBStrain00003889 | ||||||||
| Laboratory | GR | ||||||||
| Status | Live | ||||||||
| Affects | Gene | WBGene00009955 | |||||||
| Transcript | F53B2.3.1 (12) | ||||||||
| Interactor | WBInteraction000052274 | ||||||||
| WBInteraction000503473 | |||||||||
| WBInteraction000521009 | |||||||||
| Isolation | Mutagen | EMS | Paper_evidence | WBPaper00027748 | |||||
| Person_evidence | WBPerson272 | ||||||||
| Genetics | Interpolated_map_position | IV | 6.01284 | ||||||
| Description | Phenotype | WBPhenotype:0000308 | Paper_evidence | WBPaper00031480 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| Remark | Weak dauer arrest | Paper_evidence | WBPaper00031480 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Penetrance | Low | Paper_evidence | WBPaper00031480 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Phenotype_assay | Temperature | 25C | Paper_evidence | WBPaper00031480 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| WBPhenotype:0001236 | Paper_evidence | WBPaper00031480 | |||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Remark | sod-3 mRNA levels are modestly increased as assayed by real-time reverse transcription. PCR. | Paper_evidence | WBPaper00031480 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| EQ_annotations | Life_stage | WBls:0000027 | PATO:0000460 | Paper_evidence | WBPaper00031480 | ||||
| Curator_confirmed | WBPerson712 | ||||||||
| Phenotype_not_observed | WBPhenotype:0000039 | Paper_evidence | WBPaper00031480 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Remark | Animals exhibited life spans (12.9 1.9, n=97) similar to normal animals (12.7 2.1 days, n=101). | Paper_evidence | WBPaper00031480 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Phenotype_assay | Treatment | Life span was measured as described in Hu et al. 2006. | Paper_evidence | WBPaper00031480 | |||||
| Curator_confirmed | WBPerson712 | ||||||||
| Temperature | 25 | Paper_evidence | WBPaper00031480 | ||||||
| Curator_confirmed | WBPerson712 | ||||||||
| Reference | WBPaper00031480 | ||||||||
| Method | Substitution_allele |
