WormBase Tree Display for Variation: WBVar00091897
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| WBVar00091897 | Name | Public_name | ok613 | ||||
|---|---|---|---|---|---|---|---|
| Other_name | B0564.10b.1:c.370-52_839+176del | ||||||
| B0564.10a.1:c.370-52_827+176del | |||||||
| HGVSg | CHROMOSOME_IV:g.13121075_13122567del | ||||||
| Sequence_details | SMap | S_parent | Sequence | B0564 | |||
| Flanking_sequences | gcaagtcactatgaaagtaggtaggcaggt | TCTGAAAATCTTTGAAATGCTCGATAAAGT | |||||
| Mapping_target | B0564 | ||||||
| Type_of_mutation | Deletion | ||||||
| PCR_product | OK613_external | ||||||
| OK613_internal | |||||||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00022465 | ||||||
| WBStrain00035656 | |||||||
| Laboratory | RB | ||||||
| Person | WBPerson46 | ||||||
| KO_consortium_allele | |||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00006766 | |||||
| Transcript | B0564.10b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | B0564.10b.1:c.370-52_839+176del | ||||||
| Intron_number | 4-8/9 | ||||||
| Exon_number | 5-8/10 | ||||||
| B0564.10d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 1-4/4 | ||||||
| Exon_number | 1-4/5 | ||||||
| B0564.10c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| Intron_number | 1-4/4 | ||||||
| Exon_number | 1-4/5 | ||||||
| B0564.10a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | B0564.10a.1:c.370-52_827+176del | ||||||
| Intron_number | 4-8/9 | ||||||
| Exon_number | 5-8/10 | ||||||
| Interactor | WBInteraction000525161 | ||||||
| Isolation | Mutagen | UV/TMP | |||||
| Description | Phenotype | WBPhenotype:0000050 | Paper_evidence | WBPaper00046510 | |||
| Curator_confirmed | WBPerson3733 | ||||||
| WBPhenotype:0000054 | Paper_evidence | WBPaper00046510 | |||||
| Curator_confirmed | WBPerson3733 | ||||||
| WBPhenotype:0000643 | Paper_evidence | WBPaper00061439 | |||||
| Curator_confirmed | WBPerson49407 | ||||||
| WBPhenotype:0001014 | Paper_evidence | WBPaper00061439 | |||||
| Curator_confirmed | WBPerson49407 | ||||||
| Remark | UNC-30 functional loss exhibits enhanced immunity | Paper_evidence | WBPaper00061439 | ||||
| Curator_confirmed | WBPerson49407 | ||||||
| WBPhenotype:0001171 | Paper_evidence | WBPaper00061439 | |||||
| Curator_confirmed | WBPerson49407 | ||||||
| Remark | UNC-30 functional loss exhibits enhanced reduced longevity | Paper_evidence | WBPaper00061439 | ||||
| Curator_confirmed | WBPerson49407 | ||||||
| WBPhenotype:0002461 | Paper_evidence | WBPaper00061439 | |||||
| Curator_confirmed | WBPerson49407 | ||||||
| Reference | WBPaper00046510 | ||||||
| WBPaper00061439 | |||||||
| Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||||
| Method | KO_consortium_allele |
