WormBase Tree Display for Variation: WBVar00093056

WBVar00093056 Name: Public_name: ok1859
    Other_name: T13G4.3.1:c.1275_1937-4del
      T13G4.3.2:c.1275_1937-4del
    HGVSg: CHROMOSOME_X:g.1170342_1172366del
  Sequence_details: SMap: S_parent: Sequence: T13G4
    Flanking_sequences: aatggaaaattatcatccgagaaccgcgtt cagagaccattcaaatgtctgaagcagctc
    Mapping_target: T13G4
    Type_of_mutation: Deletion
    PCR_product: OK1859_external
      OK1859_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00032242
    Laboratory: RB
    Person: WBPerson46
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00020490
    Transcript: T13G4.3.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T13G4.3.1:c.1275_1937-4del
        cDNA_position: 1349-?
        CDS_position: 1275-?
        Protein_position: 425-?
        Intron_number: 11-15/28
        Exon_number: 11-15/29
      T13G4.3.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: T13G4.3.2:c.1275_1937-4del
        cDNA_position: 1481-?
        CDS_position: 1275-?
        Protein_position: 425-?
        Intron_number: 12-16/29
        Exon_number: 12-16/30
  Isolation: Mutagen: EMS
  Description: Phenotype: WBPhenotype:0002385 Paper_evidence: WBPaper00049733
        Curator_confirmed: WBPerson2026
        Remark: Figure 2, animals showed defects in sensing the alkaline PH. Paper_evidence: WBPaper00049733
            Curator_confirmed: WBPerson2026
        Rescued_by_transgene: WBTransgene00025915
      WBPhenotype:0004029 Paper_evidence: WBPaper00064660
        Curator_confirmed: WBPerson51549
  Reference: WBPaper00049733
    WBPaper00064660
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele