WormBase Tree Display for Variation: WBVar00095019
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| WBVar00095019 | Evidence | Paper_evidence | WBPaper00031000 | ||||
|---|---|---|---|---|---|---|---|
| Name | Public_name | ox301 | |||||
| Other_name | CE43592:p.Gln399Ter | ||||||
| CE41563:p.Gln399Ter | |||||||
| F25C8.3a.1:c.1195C>T | |||||||
| F25C8.3b.1:c.1195C>T | |||||||
| CE47428:p.Gln399Ter | |||||||
| CE47117:p.Gln399Ter | |||||||
| F25C8.3d.1:c.1195C>T | |||||||
| F25C8.3e.1:c.1195C>T | |||||||
| F25C8.3c.1:c.1141C>T | |||||||
| CE47217:p.Gln381Ter | |||||||
| HGVSg | CHROMOSOME_V:g.20884351C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | F25C8 | |||
| Flanking_sequences | tccttatctgcagtattttttagttccgat | aggcacccctggttaatttatctgacatat | |||||
| Mapping_target | F25C8 | ||||||
| Type_of_mutation | Substitution | c | t | Paper_evidence | WBPaper00031000 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Laboratory | EG | ||||||
| Status | Live | ||||||
| Affects | Gene | WBGene00006812 | |||||
| Transcript | F25C8.3d.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | F25C8.3d.1:c.1195C>T | ||||||
| HGVSp | CE43592:p.Gln399Ter | ||||||
| cDNA_position | 1195 | ||||||
| CDS_position | 1195 | ||||||
| Protein_position | 399 | ||||||
| Exon_number | 7/37 | ||||||
| Codon_change | Cag/Tag | ||||||
| Amino_acid_change | Q/* | ||||||
| F25C8.3b.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | F25C8.3b.1:c.1195C>T | ||||||
| HGVSp | CE47117:p.Gln399Ter | ||||||
| cDNA_position | 1448 | ||||||
| CDS_position | 1195 | ||||||
| Protein_position | 399 | ||||||
| Exon_number | 8/36 | ||||||
| Codon_change | Cag/Tag | ||||||
| Amino_acid_change | Q/* | ||||||
| F25C8.3e.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | F25C8.3e.1:c.1195C>T | ||||||
| HGVSp | CE47428:p.Gln399Ter | ||||||
| cDNA_position | 1195 | ||||||
| CDS_position | 1195 | ||||||
| Protein_position | 399 | ||||||
| Exon_number | 7/34 | ||||||
| Codon_change | Cag/Tag | ||||||
| Amino_acid_change | Q/* | ||||||
| F25C8.3c.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | F25C8.3c.1:c.1141C>T | ||||||
| HGVSp | CE47217:p.Gln381Ter | ||||||
| cDNA_position | 1141 | ||||||
| CDS_position | 1141 | ||||||
| Protein_position | 381 | ||||||
| Exon_number | 7/35 | ||||||
| Codon_change | Cag/Tag | ||||||
| Amino_acid_change | Q/* | ||||||
| F25C8.3a.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | F25C8.3a.1:c.1195C>T | ||||||
| HGVSp | CE41563:p.Gln399Ter | ||||||
| cDNA_position | 1195 | ||||||
| CDS_position | 1195 | ||||||
| Protein_position | 399 | ||||||
| Exon_number | 7/37 | ||||||
| Codon_change | Cag/Tag | ||||||
| Amino_acid_change | Q/* | ||||||
| Interactor | WBInteraction000503016 | ||||||
| WBInteraction000503017 | |||||||
| Isolation | Mutagen | ENU | Paper_evidence | WBPaper00031000 | |||
| Genetics | Interpolated_map_position | V | 25.5709 | ||||
| Reference | WBPaper00031000 | ||||||
| Method | Substitution_allele |
