WormBase Tree Display for Variation: WBVar00107944
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| WBVar00107944 | Evidence | Paper_evidence | WBPaper00030778 | |||
|---|---|---|---|---|---|---|
| Name | Public_name | WBVar00107944 | ||||
| Other_name | cbs43465 | |||||
| HGVSg | chrII:g.7969000T>A | |||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0058 | ||
| Flanking_sequences | atcttccagattgctatacgaagtttttcagtagagggattgctaacctt | accgaatccaagttgctggcggcggaattcatccgcggaagagtatccat | ||||
| Mapping_target | cb25.fpc0058 | |||||
| Type_of_mutation | Substitution | T | A | |||
| SeqStatus | Sequenced | |||||
| Variation_type | SNP | |||||
| Predicted_SNP | ||||||
| RFLP | Reference_strain_digest | TCNGA | Hpy188I | 694 162 144 | ||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 154 140 113 112 110 68 62 53 47 32 32 28 22 14 9 4 | ||||
| Polymorphic_strain_digest | TCNGA | Hpy188I | 838 162 | |||
| AATT | Sse9I, TasI, Tsp509I, TspEI | 178 154 140 113 112 62 53 47 32 32 28 22 14 9 4 | ||||
| Natural_variant | ||||||
| Origin | Species | Caenorhabditis briggsae | ||||
| Strain | WBStrain00041077 | |||||
| Laboratory | CP | |||||
| Person | WBPerson3706 | |||||
| WBPerson227 | ||||||
| WBPerson225 | ||||||
| Status | Live | |||||
| Affects | Gene | WBGene00025929 | ||||
| Transcript | CBG02975a.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | |||||
| HGVSc | CBG02975a.1:c.51A>T | |||||
| HGVSp | CBP41634.1:p.Val17%3D | |||||
| cDNA_position | 68 | |||||
| CDS_position | 51 | |||||
| Protein_position | 17 | |||||
| Exon_number | 2/26 | |||||
| Codon_change | gtA/gtT | |||||
| Amino_acid_change | V | |||||
| CBG02975b.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | CBG02975b.1:c.51A>T | |||||
| HGVSp | CBP39554.1:p.Val17%3D | |||||
| cDNA_position | 51 | |||||
| CDS_position | 51 | |||||
| Protein_position | 17 | |||||
| Exon_number | 1/22 | |||||
| Codon_change | gtA/gtT | |||||
| Amino_acid_change | V | |||||
| CBG02975c.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | CBG02975c.1:c.51A>T | |||||
| HGVSp | CBP46799.1:p.Val17%3D | |||||
| cDNA_position | 68 | |||||
| CDS_position | 51 | |||||
| Protein_position | 17 | |||||
| Exon_number | 2/25 | |||||
| Codon_change | gtA/gtT | |||||
| Amino_acid_change | V | |||||
| CBG02975d.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | CBG02975d.1:c.51A>T | |||||
| HGVSp | CBP42006.1:p.Val17%3D | |||||
| cDNA_position | 68 | |||||
| CDS_position | 51 | |||||
| Protein_position | 17 | |||||
| Exon_number | 2/24 | |||||
| Codon_change | gtA/gtT | |||||
| Amino_acid_change | V | |||||
| CBG02975e.1 | VEP_consequence | synonymous_variant | ||||
| VEP_impact | LOW | |||||
| HGVSc | CBG02975e.1:c.51A>T | |||||
| HGVSp | CBP40048.1:p.Val17%3D | |||||
| cDNA_position | 68 | |||||
| CDS_position | 51 | |||||
| Protein_position | 17 | |||||
| Exon_number | 2/25 | |||||
| Codon_change | gtA/gtT | |||||
| Amino_acid_change | V | |||||
| Reference | WBPaper00030778 | |||||
| Remark | Predicted by: ssaha-SNP v2.0 | |||||
| This SNP was observed in 1 sequencing read(s) | ||||||
| Method | SNP |
