WormBase Tree Display for Variation: WBVar00110282

WBVar00110282 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00110282
    Other_name: cbs45803
    HGVSg: chrX:g.17175494T>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0106
    Flanking_sequences: ctgatttttctttcgacaacatcttcttgtagcggattctcttatttccg accaattgctgacctgaaacatacaaagtattgcgaaaacattacaaccc
    Mapping_target: cb25.fpc0106
    Type_of_mutation: Substitution: A G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CAC HindI 177 145 141 81 54 49 49 41 40 40 27 26 23 21 18 17 11 8 5 5 4 4 4 4 3 3
        TCNNGA Hpy178III, Hpy188III 333 225 157 146 139
        TCNGA Hpy188I 502 200 151 53 47 47
      Polymorphic_strain_digest: CAC HindI 177 145 103 81 54 49 49 41 40 40 38 27 26 23 21 18 17 11 8 5 5 4 4 4 4 3 3
        TCNNGA Hpy178III, Hpy188III 275 225 157 146 139 58
        TCNGA Hpy188I 549 200 151 53 47
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00027778
    Transcript: CBG05292.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG05292.1:c.704T>C
        HGVSp: CBP07031.1:p.Phe235Ser
        cDNA_position: 709
        CDS_position: 704
        Protein_position: 235
        Exon_number: 5/7
        Codon_change: tTc/tCc
        Amino_acid_change: F/S
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP