WormBase Tree Display for Variation: WBVar00110285

WBVar00110285 Evidence: Paper_evidence: WBPaper00030778
      WBPaper00055507
  Name: Public_name: WBVar00110285
    Other_name: cbs45806
      cb45806 Paper_evidence: WBPaper00055507
    HGVSg: chrX:g.17175767A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0106
    Flanking_sequences: tcctttgttccataaaataatggtt tcatgaaacatttttaaaagccgtg
    Mapping_target: cb25.fpc0106
    Type_of_mutation: Substitution: T C
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest: CAC HindI 177 145 141 96 62 54 49 42 41 40 30 24 23 21 18 13 11 5 5 3
        TCNNGA Hpy178III, Hpy188III 333 280 218 157 12
        TCNGA Hpy188I 424 229 200 53 47 47
      Polymorphic_strain_digest: CAC HindI 177 145 103 96 62 54 49 42 41 40 38 30 24 23 21 18 13 11 5 5 3
        TCNNGA Hpy178III, Hpy188III 280 275 218 157 58 12
        TCNGA Hpy188I 424 276 200 53 47
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00027778
    Transcript: CBG05292.1 VEP_consequence: intron_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05292.1:c.868-78A>C
        Intron_number: 5/6
  Reference: WBPaper00030778
    WBPaper00055507
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 2 sequencing read(s)
  Method: SNP