WormBase Tree Display for Variation: WBVar00110669

WBVar00110669 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00110669
    Other_name: cbs46190
    HGVSg: chrV:g.18799634A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0129
    Flanking_sequences: atgtggcgaagaaagtcatctggacatgcattgtagaagagccacaactg tcttaagacactttctcgagaagctcactaatcgagatcgtcaggttagt
    Mapping_target: cb25.fpc0129
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest (16)
      Polymorphic_strain_digest (16)
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00027983
    Transcript: CBG05555a.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG05555a.1:c.5944T>G
        HGVSp: CBP41304.1:p.Phe1982Val
        cDNA_position: 6255
        CDS_position: 5944
        Protein_position: 1982
        Exon_number: 24/35
        Codon_change: Ttc/Gtc
        Amino_acid_change: F/V
      CBG05555b.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG05555b.1:c.5803T>G
        HGVSp: CBP38139.1:p.Phe1935Val
        cDNA_position: 5803
        CDS_position: 5803
        Protein_position: 1935
        Exon_number: 22/33
        Codon_change: Ttc/Gtc
        Amino_acid_change: F/V
      CBG05555c.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG05555c.1:c.5917T>G
        HGVSp: CBP45194.1:p.Phe1973Val
        cDNA_position: 5917
        CDS_position: 5917
        Protein_position: 1973
        Exon_number: 22/33
        Codon_change: Ttc/Gtc
        Amino_acid_change: F/V
      CBG05555d.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG05555d.1:c.5776T>G
        HGVSp: CBP38642.1:p.Phe1926Val
        cDNA_position: 5776
        CDS_position: 5776
        Protein_position: 1926
        Exon_number: 21/31
        Codon_change: Ttc/Gtc
        Amino_acid_change: F/V
      CBG05555f.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555f.1:c.*1512T>G
        cDNA_position: 5946
        Exon_number: 23/31
      CBG05555f.2 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555f.2:c.*1485T>G
        cDNA_position: 5919
        Exon_number: 22/31
      CBG05555f.3 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555f.3:c.*1485T>G
        cDNA_position: 5919
        Exon_number: 22/23
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP