WormBase Tree Display for Variation: WBVar00110670

WBVar00110670 Evidence: Paper_evidence: WBPaper00030778
  Name: Public_name: WBVar00110670
    Other_name: cbs46191
    HGVSg: chrV:g.18799653A>C
  Sequence_details: SMap: S_parent: Sequence: cb25.fpc0129
    Flanking_sequences: aatggagtttctgttggtgatgtggcgaagaaagtcatctggacatgcat gtagaagagccacaactgttcttaagacactttctcgagaagctcactaa
    Mapping_target: cb25.fpc0129
    Type_of_mutation: Substitution: T G
    SeqStatus: Sequenced
  Variation_type: SNP
    Predicted_SNP
    RFLP: Reference_strain_digest (16)
      Polymorphic_strain_digest (16)
    Natural_variant
  Origin: Species: Caenorhabditis briggsae
    Strain: WBStrain00041077
    Laboratory: CP
    Person: WBPerson3706
      WBPerson227
      WBPerson225
    Status: Live
  Affects: Gene: WBGene00027983
    Transcript: CBG05555a.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG05555a.1:c.5925T>G
        HGVSp: CBP41304.1:p.Ile1975Met
        cDNA_position: 6236
        CDS_position: 5925
        Protein_position: 1975
        Exon_number: 24/35
        Codon_change: atT/atG
        Amino_acid_change: I/M
      CBG05555b.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG05555b.1:c.5784T>G
        HGVSp: CBP38139.1:p.Ile1928Met
        cDNA_position: 5784
        CDS_position: 5784
        Protein_position: 1928
        Exon_number: 22/33
        Codon_change: atT/atG
        Amino_acid_change: I/M
      CBG05555c.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG05555c.1:c.5898T>G
        HGVSp: CBP45194.1:p.Ile1966Met
        cDNA_position: 5898
        CDS_position: 5898
        Protein_position: 1966
        Exon_number: 22/33
        Codon_change: atT/atG
        Amino_acid_change: I/M
      CBG05555d.1 VEP_consequence: missense_variant
        VEP_impact: MODERATE
        HGVSc: CBG05555d.1:c.5757T>G
        HGVSp: CBP38642.1:p.Ile1919Met
        cDNA_position: 5757
        CDS_position: 5757
        Protein_position: 1919
        Exon_number: 21/31
        Codon_change: atT/atG
        Amino_acid_change: I/M
      CBG05555f.1 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555f.1:c.*1493T>G
        cDNA_position: 5927
        Exon_number: 23/31
      CBG05555f.2 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555f.2:c.*1466T>G
        cDNA_position: 5900
        Exon_number: 22/31
      CBG05555f.3 VEP_consequence: 3_prime_UTR_variant
        VEP_impact: MODIFIER
        HGVSc: CBG05555f.3:c.*1466T>G
        cDNA_position: 5900
        Exon_number: 22/23
  Reference: WBPaper00030778
  Remark: Predicted by: ssaha-SNP v2.0
    This SNP was observed in 1 sequencing read(s)
  Method: SNP