WormBase Tree Display for Variation: WBVar00110673
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| WBVar00110673 | Evidence | Paper_evidence | WBPaper00030778 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00110673 | |||
| Other_name | cbs46194 | ||||
| HGVSg | chrV:g.18799725G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | cb25.fpc0129 | |
| Flanking_sequences | ttgttcccatccgctcttctatccgttgtccctcaaatcatcgaacttct | gacgaccctcaagtcgacaacaatggagtttctgttggtgatgtggcgaa | |||
| Mapping_target | cb25.fpc0129 | ||||
| Type_of_mutation | Substitution | C | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| RFLP | Reference_strain_digest (16) | ||||
| Polymorphic_strain_digest (16) | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis briggsae | |||
| Strain | WBStrain00041077 | ||||
| Laboratory | CP | ||||
| Person | WBPerson3706 | ||||
| WBPerson227 | |||||
| WBPerson225 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00027983 | |||
| Transcript | CBG05555a.1 | VEP_consequence | synonymous_variant | ||
| VEP_impact | LOW | ||||
| HGVSc | CBG05555a.1:c.5853C>T | ||||
| HGVSp | CBP41304.1:p.Leu1951%3D | ||||
| cDNA_position | 6164 | ||||
| CDS_position | 5853 | ||||
| Protein_position | 1951 | ||||
| Exon_number | 24/35 | ||||
| Codon_change | ctC/ctT | ||||
| Amino_acid_change | L | ||||
| CBG05555b.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | CBG05555b.1:c.5712C>T | ||||
| HGVSp | CBP38139.1:p.Leu1904%3D | ||||
| cDNA_position | 5712 | ||||
| CDS_position | 5712 | ||||
| Protein_position | 1904 | ||||
| Exon_number | 22/33 | ||||
| Codon_change | ctC/ctT | ||||
| Amino_acid_change | L | ||||
| CBG05555c.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | CBG05555c.1:c.5826C>T | ||||
| HGVSp | CBP45194.1:p.Leu1942%3D | ||||
| cDNA_position | 5826 | ||||
| CDS_position | 5826 | ||||
| Protein_position | 1942 | ||||
| Exon_number | 22/33 | ||||
| Codon_change | ctC/ctT | ||||
| Amino_acid_change | L | ||||
| CBG05555d.1 | VEP_consequence | synonymous_variant | |||
| VEP_impact | LOW | ||||
| HGVSc | CBG05555d.1:c.5685C>T | ||||
| HGVSp | CBP38642.1:p.Leu1895%3D | ||||
| cDNA_position | 5685 | ||||
| CDS_position | 5685 | ||||
| Protein_position | 1895 | ||||
| Exon_number | 21/31 | ||||
| Codon_change | ctC/ctT | ||||
| Amino_acid_change | L | ||||
| CBG05555f.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | CBG05555f.1:c.*1421C>T | ||||
| cDNA_position | 5855 | ||||
| Exon_number | 23/31 | ||||
| CBG05555f.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | CBG05555f.2:c.*1394C>T | ||||
| cDNA_position | 5828 | ||||
| Exon_number | 22/31 | ||||
| CBG05555f.3 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | CBG05555f.3:c.*1394C>T | ||||
| cDNA_position | 5828 | ||||
| Exon_number | 22/23 | ||||
| Reference | WBPaper00030778 | ||||
| Remark | Predicted by: ssaha-SNP v2.0 | ||||
| This SNP was observed in 1 sequencing read(s) | |||||
| Method | SNP |
