WormBase Tree Display for Variation: WBVar00113242
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WBVar00113242 | Evidence | Paper_evidence | WBPaper00030778 | ||
---|---|---|---|---|---|
WBPaper00055507 | |||||
Name | Public_name | WBVar00113242 | |||
Other_name | cbs48763 | ||||
cb48763 | Paper_evidence | WBPaper00055507 | |||
HGVSg | chrI:g.6127888G>T | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc1417 | |
Flanking_sequences | gatctgtgaaaaggcaccgacaggg | gaaagcctcctccctcatcctcttc | |||
Mapping_target | cb25.fpc1417 | ||||
Type_of_mutation | Substitution | G | T | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP (2) | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis briggsae | |||
Strain | WBStrain00041077 | ||||
Laboratory | CP | ||||
Person | WBPerson3706 | ||||
WBPerson227 | |||||
WBPerson225 | |||||
Status | Live | ||||
Affects | Gene | WBGene00030075 | |||
Transcript | CBG08244a.1 | VEP_consequence | intron_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | CBG08244a.1:c.139-209C>A | ||||
Intron_number | 2/8 | ||||
CBG08244b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG08244b.1:c.139-209C>A | ||||
Intron_number | 1/7 | ||||
CBG08244c.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | CBG08244c.1:c.139-209C>A | ||||
Intron_number | 2/9 | ||||
Reference | WBPaper00030778 | ||||
WBPaper00055507 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | ||||
This SNP was observed in 1 sequencing read(s) | |||||
Method | SNP |