WormBase Tree Display for Variation: WBVar00124213
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WBVar00124213 | Evidence | Paper_evidence | WBPaper00030778 | ||
---|---|---|---|---|---|
Name | Public_name | WBVar00124213 | |||
Other_name | cbs59734 | ||||
HGVSg | chrIII:g.8105625C>T | ||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc4044a | |
Flanking_sequences | acagccaatcccaaaacgaagttcgcatgattgatgcactcggcgtagta | gtattcgtttgtggatacactcgatccaacaattcagttgcatagagaac | |||
Mapping_target | cb25.fpc4044a | ||||
Type_of_mutation | Substitution | G | A | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
RFLP (2) | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis briggsae | |||
Strain | WBStrain00041077 | ||||
Laboratory | CP | ||||
Person | WBPerson3706 | ||||
WBPerson227 | |||||
WBPerson225 | |||||
Status | Live | ||||
Affects | Gene | WBGene00036546 | |||
Transcript | CBG16666a.1 | VEP_consequence | synonymous_variant | ||
VEP_impact | LOW | ||||
HGVSc | CBG16666a.1:c.2094C>T | ||||
HGVSp | CBP23420.1:p.Thr698%3D | ||||
cDNA_position | 2094 | ||||
CDS_position | 2094 | ||||
Protein_position | 698 | ||||
Exon_number | 12/19 | ||||
Codon_change | acC/acT | ||||
Amino_acid_change | T | ||||
CBG16666b.1 | VEP_consequence | synonymous_variant | |||
VEP_impact | LOW | ||||
HGVSc | CBG16666b.1:c.1962C>T | ||||
HGVSp | CBP39579.1:p.Thr654%3D | ||||
cDNA_position | 2067 | ||||
CDS_position | 1962 | ||||
Protein_position | 654 | ||||
Exon_number | 12/18 | ||||
Codon_change | acC/acT | ||||
Amino_acid_change | T | ||||
Reference | WBPaper00030778 | ||||
Remark | Predicted by: ssaha-SNP v2.0 | ||||
This SNP was observed in 1 sequencing read(s) | |||||
Method | SNP |