WormBase Tree Display for Variation: WBVar00127904
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WBVar00127904 | Evidence | Paper_evidence | WBPaper00030778 | |||
---|---|---|---|---|---|---|
Name | Public_name | WBVar00127904 | ||||
Other_name | cbs63425 | |||||
HGVSg | chrIV:g.5983885A>G | |||||
Sequence_details | SMap | S_parent | Sequence | cb25.fpc4152 | ||
Flanking_sequences | ttttcggattctgtgcctttaaaagtacaataccctttactcactttttc | cttgtaaatgagatgtttcattctgtaaagtccgataaacccattccaaa | ||||
Mapping_target | cb25.fpc4152 | |||||
Type_of_mutation | Substitution | T | C | |||
SeqStatus | Sequenced | |||||
Variation_type | SNP | |||||
Predicted_SNP | ||||||
RFLP | Reference_strain_digest | RAATTY | AcsI, ApoI, XapI | 250 144 104 86 73 67 67 58 49 38 37 27 | ||
TTTAAA | AhaIII, DraI | 531 391 78 | ||||
CAC | HindI | 119 85 74 73 69 64 53 52 47 44 39 36 31 31 29 28 28 25 21 15 13 9 5 4 2 2 2 | ||||
TCNNGA | Hpy178III, Hpy188III | 670 257 54 19 | ||||
TTAA | MseI, Tru1I, Tru9I | 326 317 189 77 42 32 17 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 183 128 104 67 67 58 54 45 44 41 38 26 24 23 23 20 19 16 13 7 | ||||
Polymorphic_strain_digest | RAATTY | AcsI, ApoI, XapI | 323 144 103 86 67 67 58 49 38 38 27 | |||
TTTAAA | AhaIII, DraI | 531 469 | ||||
CAC | HindI | 119 88 85 74 73 69 64 53 47 44 39 31 31 29 28 28 25 21 15 13 9 5 4 2 2 2 | ||||
TCNNGA | Hpy178III, Hpy188III | 504 257 166 54 19 | ||||
TTAA | MseI, Tru1I, Tru9I | 308 294 189 76 43 32 23 18 17 | ||||
AATT | Sse9I, TasI, Tsp509I, TspEI | 183 128 103 67 67 58 54 45 44 41 38 26 24 23 23 20 19 16 14 7 | ||||
Natural_variant | ||||||
Origin | Species | Caenorhabditis briggsae | ||||
Strain | WBStrain00041077 | |||||
Laboratory | CP | |||||
Person | WBPerson3706 | |||||
WBPerson227 | ||||||
WBPerson225 | ||||||
Status | Live | |||||
Affects | Gene | WBGene00039055 | ||||
Transcript | CBG19929a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | |||||
HGVSc | CBG19929a.1:c.-2-5729T>C | |||||
Intron_number | 1/10 | |||||
CBG19929b.1 | VEP_consequence | intron_variant | ||||
VEP_impact | MODIFIER | |||||
HGVSc | CBG19929b.1:c.86-5729T>C | |||||
Intron_number | 1/8 | |||||
Reference | WBPaper00030778 | |||||
Remark | Predicted by: ssaha-SNP v2.0 | |||||
This SNP was observed in 1 sequencing read(s) | ||||||
Method | SNP |