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WormBase Tree Display for Variation: WBVar00127904

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Name Class

WBVar00127904EvidencePaper_evidenceWBPaper00030778
NamePublic_nameWBVar00127904
Other_namecbs63425
HGVSgchrIV:g.5983885A>G
Sequence_detailsSMapS_parentSequencecb25.fpc4152
Flanking_sequencesttttcggattctgtgcctttaaaagtacaataccctttactcactttttccttgtaaatgagatgtttcattctgtaaagtccgataaacccattccaaa
Mapping_targetcb25.fpc4152
Type_of_mutationSubstitutionTC
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestRAATTYAcsI, ApoI, XapI250 144 104 86 73 67 67 58 49 38 37 27
TTTAAAAhaIII, DraI531 391 78
CACHindI119 85 74 73 69 64 53 52 47 44 39 36 31 31 29 28 28 25 21 15 13 9 5 4 2 2 2
TCNNGAHpy178III, Hpy188III670 257 54 19
TTAAMseI, Tru1I, Tru9I326 317 189 77 42 32 17
AATTSse9I, TasI, Tsp509I, TspEI183 128 104 67 67 58 54 45 44 41 38 26 24 23 23 20 19 16 13 7
Polymorphic_strain_digestRAATTYAcsI, ApoI, XapI323 144 103 86 67 67 58 49 38 38 27
TTTAAAAhaIII, DraI531 469
CACHindI119 88 85 74 73 69 64 53 47 44 39 31 31 29 28 28 25 21 15 13 9 5 4 2 2 2
TCNNGAHpy178III, Hpy188III504 257 166 54 19
TTAAMseI, Tru1I, Tru9I308 294 189 76 43 32 23 18 17
AATTSse9I, TasI, Tsp509I, TspEI183 128 103 67 67 58 54 45 44 41 38 26 24 23 23 20 19 16 14 7
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00039055
TranscriptCBG19929a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG19929a.1:c.-2-5729T>C
Intron_number1/10
CBG19929b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG19929b.1:c.86-5729T>C
Intron_number1/8
ReferenceWBPaper00030778
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP