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WormBase Tree Display for Variation: WBVar00127907

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Name Class

WBVar00127907EvidencePaper_evidenceWBPaper00030778
NamePublic_nameWBVar00127907
Other_namecbs63428
HGVSgchrIV:g.5983859A>C
Sequence_detailsSMapS_parentSequencecb25.fpc4152
Flanking_sequencesacaataccctttactcactttttctcttgtaaatgagatgtttcattctgaaagtccgataaacccattccaaaaattcccaatttgtgtggaactatcg
Mapping_targetcb25.fpc4152
Type_of_mutationSubstitutionTG
SeqStatusSequenced
Variation_typeSNP
Predicted_SNP
RFLPReference_strain_digestRAATTYAcsI, ApoI, XapI250 170 104 86 67 67 58 49 47 38 37 27
TTTAAAAhaIII, DraI557 391 52
CACHindI119 85 74 73 69 64 54 52 47 44 42 39 36 31 31 29 28 25 21 15 13 5 2 2
TCNNGAHpy178III, Hpy188III663 283 54
TTAAMseI, Tru1I, Tru9I326 317 189 51 43 42 32
AATTSse9I, TasI, Tsp509I, TspEI183 128 104 67 67 58 45 44 42 41 38 28 26 24 23 23 20 19 13 7
Polymorphic_strain_digestRAATTYAcsI, ApoI, XapI297 170 103 86 67 67 58 49 38 38 27
TTTAAAAhaIII, DraI557 443
CACHindI119 88 85 74 73 69 64 54 47 44 42 39 31 31 29 28 25 21 15 13 5 2 2
TCNNGAHpy178III, Hpy188III497 283 166 54
TTAAMseI, Tru1I, Tru9I308 294 189 50 43 43 32 23 18
AATTSse9I, TasI, Tsp509I, TspEI183 128 103 67 67 58 45 44 42 41 38 28 26 24 23 23 20 19 14 7
Natural_variant
OriginSpeciesCaenorhabditis briggsae
StrainWBStrain00041077
LaboratoryCP
PersonWBPerson3706
WBPerson227
WBPerson225
StatusLive
AffectsGeneWBGene00039055
TranscriptCBG19929a.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG19929a.1:c.-2-5703T>G
Intron_number1/10
CBG19929b.1VEP_consequenceintron_variant
VEP_impactMODIFIER
HGVScCBG19929b.1:c.86-5703T>G
Intron_number1/8
ReferenceWBPaper00030778
RemarkPredicted by: ssaha-SNP v2.0
This SNP was observed in 1 sequencing read(s)
MethodSNP