WormBase Tree Display for Variation: WBVar00142935
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| WBVar00142935 | Name | Public_name | e51 | ||||
|---|---|---|---|---|---|---|---|
| Other_name (18) | |||||||
| HGVSg | CHROMOSOME_I:g.7434408C>T | ||||||
| Sequence_details | SMap | S_parent | Sequence | C44E1 | |||
| Flanking_sequences | AAGATGACACTCACCAATATGATGAAGTTGATCGTGGATCC | GAGTATCTTTCACAAGAACACCATCAGTAGATAGAACAG | |||||
| Mapping_target | C44E1 | ||||||
| Type_of_mutation | Substitution | C | T | Person_evidence | WBPerson26471 | ||
| SeqStatus | Sequenced | ||||||
| Variation_type | Engineered_allele | ||||||
| Origin | Species | Caenorhabditis elegans | |||||
| Strain (64) | |||||||
| Laboratory | CB | ||||||
| KR | |||||||
| NCA | |||||||
| Person | WBPerson26471 | ||||||
| Status | Live | ||||||
| Linked_to | WBVar02146566 | ||||||
| Affects | Gene | WBGene00006752 | |||||
| Transcript | ZK524.2e.1 | VEP_consequence | stop_gained | ||||
| VEP_impact | HIGH | ||||||
| HGVSc | ZK524.2e.1:c.1411C>T | ||||||
| HGVSp | CE34626:p.Arg471Ter | ||||||
| cDNA_position | 1411 | ||||||
| CDS_position | 1411 | ||||||
| Protein_position | 471 | ||||||
| Exon_number | 11/30 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| ZK524.2c.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | ZK524.2c.1:c.388C>T | ||||||
| HGVSp | CE34624:p.Arg130Ter | ||||||
| cDNA_position | 388 | ||||||
| CDS_position | 388 | ||||||
| Protein_position | 130 | ||||||
| Exon_number | 3/22 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| ZK524.2f.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | ZK524.2f.1:c.1420C>T | ||||||
| HGVSp | CE43866:p.Arg474Ter | ||||||
| cDNA_position | 1420 | ||||||
| CDS_position | 1420 | ||||||
| Protein_position | 474 | ||||||
| Exon_number | 11/30 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| ZK524.2j.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | ZK524.2j.1:c.1375C>T | ||||||
| HGVSp | CE51718:p.Arg459Ter | ||||||
| cDNA_position | 1375 | ||||||
| CDS_position | 1375 | ||||||
| Protein_position | 459 | ||||||
| Exon_number | 11/29 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| ZK524.2k.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | ZK524.2k.1:c.1366C>T | ||||||
| HGVSp | CE51726:p.Arg456Ter | ||||||
| cDNA_position | 1366 | ||||||
| CDS_position | 1366 | ||||||
| Protein_position | 456 | ||||||
| Exon_number | 11/29 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| ZK524.2a.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | ZK524.2a.1:c.1411C>T | ||||||
| HGVSp | CE15371:p.Arg471Ter | ||||||
| cDNA_position | 1411 | ||||||
| CDS_position | 1411 | ||||||
| Protein_position | 471 | ||||||
| Exon_number | 11/30 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| ZK524.2i.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | ZK524.2i.1:c.1420C>T | ||||||
| HGVSp | CE32552:p.Arg474Ter | ||||||
| cDNA_position | 1420 | ||||||
| CDS_position | 1420 | ||||||
| Protein_position | 474 | ||||||
| Exon_number | 11/29 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| ZK524.2d.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | ZK524.2d.1:c.1411C>T | ||||||
| HGVSp | CE34625:p.Arg471Ter | ||||||
| cDNA_position | 1411 | ||||||
| CDS_position | 1411 | ||||||
| Protein_position | 471 | ||||||
| Exon_number | 11/31 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| ZK524.2h.1 | VEP_consequence | stop_gained | |||||
| VEP_impact | HIGH | ||||||
| HGVSc | ZK524.2h.1:c.388C>T | ||||||
| HGVSp | CE51759:p.Arg130Ter | ||||||
| cDNA_position | 388 | ||||||
| CDS_position | 388 | ||||||
| Protein_position | 130 | ||||||
| Exon_number | 3/21 | ||||||
| Codon_change | Cga/Tga | ||||||
| Amino_acid_change | R/* | ||||||
| Interactor | WBInteraction000518950 | ||||||
| Isolation | Mutagen | EMS | |||||
| Genetics | Interpolated_map_position | I | 2.07389 | ||||
| Mapping_data | In_2_point (20) | ||||||
| In_multi_point (87) | |||||||
| In_pos_neg_data | 466 | ||||||
| 470 | |||||||
| 2514 | |||||||
| 5851 | |||||||
| 5853 | |||||||
| 5963 | |||||||
| 8066 | |||||||
| 8086 | |||||||
| Description (2) | |||||||
| Reference (29) | |||||||
| Remark | Old Mapping_target ZK524 updated based on the VEP analysis pipeline to C44E1. | ||||||
| Manually curated Gene associations preserved as a text remark so that VEP is the canonical predictor of consequence: WBGene00006752 Opal_UGA R to STOP | Person_evidence | WBPerson26471" | |||||
| WBPerson26471 | |||||||
| Method | Substitution_allele |
