WormBase Tree Display for Variation: WBVar00142966
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WBVar00142966 | Evidence | Paper_evidence | WBPaper00005014 | ||||
---|---|---|---|---|---|---|---|
Name | Public_name | e109 | |||||
Other_name | ZK1098.10a.2:c.549-152_670+174del | ||||||
ZK1098.10e.1:c.657-152_778+174del | |||||||
ZK1098.10h.1:c.657-152_778+174del | |||||||
ZK1098.10b.1:c.657-152_778+174del | |||||||
ZK1098.10j.1:c.549-152_670+174del | |||||||
ZK1098.10d.1:c.657-152_778+174del | |||||||
ZK1098.10i.1:c.657-152_778+174del | |||||||
ZK1098.10n.1:c.657-152_778+174del | |||||||
ZK1098.10m.1:c.714-152_835+174del | |||||||
ZK1098.10a.1:c.549-152_670+174del | |||||||
ZK1098.10l.1:c.657-152_778+174del | |||||||
HGVSg | CHROMOSOME_III:g.9548414_9548861del | ||||||
Sequence_details | SMap | S_parent | Sequence | ZK1098 | |||
Flanking_sequences | ttattgtttaaaaaaattgtataaattcgc | ggcacgggttttcgcaaccgccgcgcgttt | |||||
Mapping_target | ZK1098 | ||||||
Type_of_mutation | Deletion | ||||||
SeqStatus | Sequenced | ||||||
Variation_type | Allele | ||||||
Origin | Species | Caenorhabditis elegans | |||||
Strain | WBStrain00004103 | ||||||
Laboratory | CB | ||||||
Status | Live | ||||||
Affects | Gene | WBGene00006755 | |||||
Transcript | ZK1098.10j.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||
VEP_impact | HIGH | ||||||
HGVSc | ZK1098.10j.1:c.549-152_670+174del | ||||||
Intron_number | 3-4/12 | ||||||
Exon_number | 4/13 | ||||||
ZK1098.10b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK1098.10b.1:c.657-152_778+174del | ||||||
Intron_number | 5-6/21 | ||||||
Exon_number | 6/22 | ||||||
ZK1098.10a.2 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK1098.10a.2:c.549-152_670+174del | ||||||
Intron_number | 4-5/22 | ||||||
Exon_number | 5/23 | ||||||
ZK1098.10h.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK1098.10h.1:c.657-152_778+174del | ||||||
Intron_number | 4-5/12 | ||||||
Exon_number | 5/13 | ||||||
ZK1098.10l.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK1098.10l.1:c.657-152_778+174del | ||||||
Intron_number | 4-5/11 | ||||||
Exon_number | 5/12 | ||||||
ZK1098.10i.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK1098.10i.1:c.657-152_778+174del | ||||||
Intron_number | 5-6/13 | ||||||
Exon_number | 6/14 | ||||||
ZK1098.10a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK1098.10a.1:c.549-152_670+174del | ||||||
Intron_number | 5-6/23 | ||||||
Exon_number | 6/24 | ||||||
ZK1098.10f.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||
VEP_impact | HIGH | ||||||
Intron_number | 1/15 | ||||||
Exon_number | 1/16 | ||||||
ZK1098.10e.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK1098.10e.1:c.657-152_778+174del | ||||||
Intron_number | 5-6/22 | ||||||
Exon_number | 6/23 | ||||||
ZK1098.10n.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK1098.10n.1:c.657-152_778+174del | ||||||
Intron_number | 4-5/12 | ||||||
Exon_number | 5/13 | ||||||
ZK1098.10m.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK1098.10m.1:c.714-152_835+174del | ||||||
Intron_number | 5-6/14 | ||||||
Exon_number | 6/15 | ||||||
ZK1098.10k.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | |||||
VEP_impact | HIGH | ||||||
Intron_number | 1/9 | ||||||
Exon_number | 1/10 | ||||||
ZK1098.10d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||||
VEP_impact | HIGH | ||||||
HGVSc | ZK1098.10d.1:c.657-152_778+174del | ||||||
Intron_number | 5-6/22 | ||||||
Exon_number | 6/23 | ||||||
Interactor | WBInteraction000501732 | ||||||
WBInteraction000501733 | |||||||
WBInteraction000501736 | |||||||
WBInteraction000502019 | |||||||
Genetics | Interpolated_map_position | III | 0.584279 | ||||
Mapping_data | In_2_point | 54 | |||||
83 | |||||||
In_multi_point (13) | |||||||
Description | Phenotype (26) | ||||||
Phenotype_not_observed | WBPhenotype:0000039 | Paper_evidence | WBPaper00025132 | ||||
Curator_confirmed | WBPerson712 | ||||||
Remark | mutants show little effect on lifespan | Paper_evidence | WBPaper00025132 | ||||
Curator_confirmed | WBPerson712 | ||||||
WBPhenotype:0000679 | Paper_evidence | WBPaper00028448 | |||||
Curator_confirmed | WBPerson712 | ||||||
Remark | PKD-2::GFP localization is not different from wild type. | Paper_evidence | WBPaper00028448 | ||||
Curator_confirmed | WBPerson712 | ||||||
Reference | WBPaper00038128 | ||||||
WBPaper00043908 | |||||||
WBPaper00025132 | |||||||
WBPaper00028448 | |||||||
WBPaper00000031 | |||||||
WBPaper00023027 | |||||||
WBPaper00002315 | |||||||
WBPaper00016876 | |||||||
WBPaper00010139 | |||||||
WBPaper00052855 | |||||||
Method | Deletion_allele |