WormBase Tree Display for Variation: WBVar00142966

WBVar00142966 Evidence: Paper_evidence: WBPaper00005014
  Name: Public_name: e109
    Other_name (11)
    HGVSg: CHROMOSOME_III:g.9548414_9548861del
  Sequence_details: SMap: S_parent: Sequence: ZK1098
    Flanking_sequences: ttattgtttaaaaaaattgtataaattcgc ggcacgggttttcgcaaccgccgcgcgttt
    Mapping_target: ZK1098
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004103
    Laboratory: CB
    Status: Live
  Affects: Gene: WBGene00006755
    Transcript (13)
    Interactor: WBInteraction000501732
      WBInteraction000501733
      WBInteraction000501736
      WBInteraction000502019
  Genetics: Interpolated_map_position: III 0.584279
    Mapping_data: In_2_point: 54
        83
      In_multi_point (13)
  Description: Phenotype: WBPhenotype:0000209 Paper_evidence: WBPaper00002315
        Curator_confirmed: WBPerson712
        Remark: Animals exhibited moderately short defecation cycles at 25C but wild-type mean cycle times at 20C. Paper_evidence: WBPaper00002315
            Curator_confirmed: WBPerson712
        Recessive: Paper_evidence: WBPaper00002315
          Curator_confirmed: WBPerson712
        Temperature_sensitive: Heat_sensitive: 25 Paper_evidence: WBPaper00002315
              Curator_confirmed: WBPerson712
        Phenotype_assay: Temperature: 20, 25 Paper_evidence: WBPaper00002315
              Curator_confirmed: WBPerson712
      WBPhenotype:0000229 Person_evidence: WBPerson261
        Curator_confirmed: WBPerson712
        Remark: small Person_evidence: WBPerson261
            Curator_confirmed: WBPerson712
      WBPhenotype:0000324 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0000542 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0000641 Person_evidence: WBPerson261
        Curator_confirmed: WBPerson712
        Remark: males more active Person_evidence: WBPerson261
            Curator_confirmed: WBPerson712
        Ease_of_scoring: ES3_Easy_to_score: Person_evidence: WBPerson261
            Curator_confirmed: WBPerson712
      WBPhenotype:0000643 Paper_evidence: WBPaper00000031
        Curator_confirmed: WBPerson48
      WBPhenotype:0000646 Person_evidence: WBPerson261
        Curator_confirmed: WBPerson712
        Remark: very sluggish Person_evidence: WBPerson261
            Curator_confirmed: WBPerson712
      WBPhenotype:0001309 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0001639 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0001791 Paper_evidence: WBPaper00002315
        Curator_confirmed: WBPerson712
        Remark: Animals exhibited significantly different defecation cycles at 20C from that at 25C. Paper_evidence: WBPaper00002315
            Curator_confirmed: WBPerson712
        Recessive: Paper_evidence: WBPaper00002315
          Curator_confirmed: WBPerson712
        Temperature_sensitive: Heat_sensitive: 25 Paper_evidence: WBPaper00002315
              Curator_confirmed: WBPerson712
        Phenotype_assay: Temperature: 20, 25 Paper_evidence: WBPaper00002315
              Curator_confirmed: WBPerson712
      WBPhenotype:0002039 Paper_evidence: WBPaper00038128
        Curator_confirmed: WBPerson1068
        Remark: Defect of retrograde transport of APL-1 protein Paper_evidence: WBPaper00038128
            Curator_confirmed: WBPerson1068
      WBPhenotype:0002284 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002288 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002291 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002295 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002299 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002301 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002310 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002312 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002321 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002323 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002336 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002344 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002347 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
      WBPhenotype:0002477 Paper_evidence: WBPaper00052855
        Curator_confirmed: WBPerson15276
        EQ_annotations: GO_term: GO:0005840 PATO:0000460 Paper_evidence: WBPaper00052855
                Curator_confirmed: WBPerson15276
      WBPhenotype:0004023 Paper_evidence: WBPaper00043908
        Curator_confirmed: WBPerson2987
    Phenotype_not_observed: WBPhenotype:0000039 Paper_evidence: WBPaper00025132
        Curator_confirmed: WBPerson712
        Remark: mutants show little effect on lifespan Paper_evidence: WBPaper00025132
            Curator_confirmed: WBPerson712
      WBPhenotype:0000679 Paper_evidence: WBPaper00028448
        Curator_confirmed: WBPerson712
        Remark: PKD-2::GFP localization is not different from wild type. Paper_evidence: WBPaper00028448
            Curator_confirmed: WBPerson712
  Reference: WBPaper00038128
    WBPaper00043908
    WBPaper00025132
    WBPaper00028448
    WBPaper00000031
    WBPaper00023027
    WBPaper00002315
    WBPaper00016876
    WBPaper00010139
    WBPaper00052855
  Method: Deletion_allele