WormBase Tree Display for Variation: WBVar00142966

WBVar00142966 Evidence: Paper_evidence: WBPaper00005014
  Name: Public_name: e109
    Other_name (11)
    HGVSg: CHROMOSOME_III:g.9548414_9548861del
  Sequence_details: SMap: S_parent: Sequence: ZK1098
    Flanking_sequences: ttattgtttaaaaaaattgtataaattcgc ggcacgggttttcgcaaccgccgcgcgttt
    Mapping_target: ZK1098
    Type_of_mutation: Deletion
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00004103
    Laboratory: CB
    Status: Live
  Affects: Gene: WBGene00006755
    Transcript: ZK1098.10j.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10j.1:c.549-152_670+174del
        Intron_number: 3-4/12
        Exon_number: 4/13
      ZK1098.10b.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10b.1:c.657-152_778+174del
        Intron_number: 5-6/21
        Exon_number: 6/22
      ZK1098.10a.2 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10a.2:c.549-152_670+174del
        Intron_number: 4-5/22
        Exon_number: 5/23
      ZK1098.10h.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10h.1:c.657-152_778+174del
        Intron_number: 4-5/12
        Exon_number: 5/13
      ZK1098.10l.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10l.1:c.657-152_778+174del
        Intron_number: 4-5/11
        Exon_number: 5/12
      ZK1098.10i.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10i.1:c.657-152_778+174del
        Intron_number: 5-6/13
        Exon_number: 6/14
      ZK1098.10a.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10a.1:c.549-152_670+174del
        Intron_number: 5-6/23
        Exon_number: 6/24
      ZK1098.10f.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/15
        Exon_number: 1/16
      ZK1098.10e.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10e.1:c.657-152_778+174del
        Intron_number: 5-6/22
        Exon_number: 6/23
      ZK1098.10n.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10n.1:c.657-152_778+174del
        Intron_number: 4-5/12
        Exon_number: 5/13
      ZK1098.10m.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10m.1:c.714-152_835+174del
        Intron_number: 5-6/14
        Exon_number: 6/15
      ZK1098.10k.1 VEP_consequence: splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant
        VEP_impact: HIGH
        Intron_number: 1/9
        Exon_number: 1/10
      ZK1098.10d.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: ZK1098.10d.1:c.657-152_778+174del
        Intron_number: 5-6/22
        Exon_number: 6/23
    Interactor: WBInteraction000501732
      WBInteraction000501733
      WBInteraction000501736
      WBInteraction000502019
  Genetics: Interpolated_map_position: III 0.584279
    Mapping_data: In_2_point: 54
        83
      In_multi_point (13)
  Description: Phenotype (26)
    Phenotype_not_observed: WBPhenotype:0000039 Paper_evidence: WBPaper00025132
        Curator_confirmed: WBPerson712
        Remark: mutants show little effect on lifespan Paper_evidence: WBPaper00025132
            Curator_confirmed: WBPerson712
      WBPhenotype:0000679 Paper_evidence: WBPaper00028448
        Curator_confirmed: WBPerson712
        Remark: PKD-2::GFP localization is not different from wild type. Paper_evidence: WBPaper00028448
            Curator_confirmed: WBPerson712
  Reference: WBPaper00038128
    WBPaper00043908
    WBPaper00025132
    WBPaper00028448
    WBPaper00000031
    WBPaper00023027
    WBPaper00002315
    WBPaper00016876
    WBPaper00010139
    WBPaper00052855
  Method: Deletion_allele