WormBase Tree Display for Variation: WBVar00143365
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WBVar00143365 | Evidence | Paper_evidence | WBPaper00005629 | |||||
---|---|---|---|---|---|---|---|---|
Name | Public_name | e644 | ||||||
Other_name | T28F12.2h.1:c.1015-332G>A | |||||||
CE37795:p.Trp336Ter | ||||||||
T28F12.2g.1:c.1007G>A | ||||||||
T28F12.2c.1:c.-317G>A | ||||||||
T28F12.2c.2:c.-317G>A | ||||||||
T28F12.2d.6:c.-131G>A | ||||||||
T28F12.2d.4:c.-111-332G>A | ||||||||
T28F12.2f.1:c.1237-332G>A | ||||||||
T28F12.2e.1:c.1126-332G>A | ||||||||
T28F12.2d.1:c.-111-332G>A | ||||||||
T28F12.2d.8:c.-111-332G>A | ||||||||
T28F12.2d.5:c.-131G>A | ||||||||
T28F12.2a.1:c.1229G>A | ||||||||
CE21219:p.Trp410Ter | ||||||||
T28F12.2d.7:c.-111-332G>A | ||||||||
CE21220:p.Trp373Ter | ||||||||
T28F12.2d.2:c.-131G>A | ||||||||
T28F12.2d.3:c.-131G>A | ||||||||
T28F12.2d.9:c.-131G>A | ||||||||
T28F12.2b.1:c.1118G>A | ||||||||
HGVSg | CHROMOSOME_V:g.4505497G>A | |||||||
Sequence_details | SMap | S_parent | Sequence | T28F12 | ||||
Flanking_sequences | caaaggaggcgattaccaaattccgcgcgt | gttatttcacaatttgacggtaagggtgca | ||||||
Mapping_target | T28F12 | |||||||
Type_of_mutation | Substitution | g | a | Paper_evidence | WBPaper00005629 | |||
SeqStatus | Sequenced | |||||||
Variation_type | Allele | |||||||
Origin | Species | Caenorhabditis elegans | ||||||
Strain | WBStrain00004189 | |||||||
WBStrain00004365 | ||||||||
WBStrain00034029 | ||||||||
WBStrain00034031 | ||||||||
Laboratory | CB | |||||||
Status | Live | |||||||
Affects | Gene | WBGene00006796 | ||||||
Transcript (17) | ||||||||
Interactor | WBInteraction000007722 | |||||||
WBInteraction000051964 | ||||||||
WBInteraction000052185 | ||||||||
WBInteraction000052340 | ||||||||
WBInteraction000052341 | ||||||||
WBInteraction000501054 | ||||||||
WBInteraction000501055 | ||||||||
WBInteraction000501056 | ||||||||
Genetics | Interpolated_map_position | V | -5.18024 | |||||
Mapping_data | In_2_point | 125 | ||||||
In_multi_point | 143 | |||||||
1524 | ||||||||
3277 | ||||||||
In_pos_neg_data | 846 | |||||||
2870 | ||||||||
2871 | ||||||||
2872 | ||||||||
Description | Phenotype (10) | |||||||
Phenotype_not_observed | WBPhenotype:0000062 | Paper_evidence | WBPaper00001474 | |||||
Curator_confirmed | WBPerson712 | |||||||
Remark | viable Unc allele | Paper_evidence | WBPaper00001474 | |||||
Curator_confirmed | WBPerson712 | |||||||
WBPhenotype:0001660 | Paper_evidence | WBPaper00006052 | ||||||
Curator_confirmed | WBPerson2021 | |||||||
Remark | No disruption of ASE asymmetry (as seen with lim-6 reporters) | Paper_evidence | WBPaper00006052 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Variation_effect | Hypomorph_reduction_of_function | Paper_evidence | WBPaper00006052 | |||||
Curator_confirmed | WBPerson2021 | |||||||
Phenotype_assay | Genotype | otIs114, otIs6 | Paper_evidence | WBPaper00006052 | ||||
Curator_confirmed | WBPerson2021 | |||||||
Reference (12) | ||||||||
Method | Substitution_allele |