Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Variation: WBVar00143398

expand all nodes | collapse all nodes | view schema

Name Class

WBVar00143398EvidencePaper_evidenceWBPaper00005927
NamePublic_namee678
Sequence_details (2)
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
Strain (225)
LaboratoryCB
LW
StatusLive
AffectsGeneWBGene00003056
InteractorWBInteraction000521785
WBInteraction000521941
WBInteraction000524031
WBInteraction000537302
GeneticsMapping_dataIn_2_point (46)
In_multi_point (108)
In_pos_neg_data (19)
Marked_rearrangementszT1[lon-2(e678) unc-29(e403)]
szT1[lon-2(e678)]
DescriptionPhenotypeWBPhenotype:0000022Paper_evidenceWBPaper00005927
WBPaper00000031
WBPaper00029002
WBPaper00043908
WBPaper00005747
Person_evidenceWBPerson261
Curator_confirmedWBPerson48
WBPerson557
WBPerson712
WBPerson2987
Remark50% longer than wild typePaper_evidenceWBPaper00005927
Curator_confirmedWBPerson48
about 50% longer than wildtype at all stagesPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
Table 1Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Phenotype_assayGenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Ease_of_scoringES3_Easy_to_scorePerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000050Person_evidenceWBPerson261
Curator_confirmedWBPerson712
Remarksome embryonic lethalityPerson_evidenceWBPerson261
Curator_confirmedWBPerson712
PenetranceIncompletePerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000164Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0000444Person_evidenceWBPerson261
Curator_confirmedWBPerson712
RemarkMale bursa slightly elongated. Mating always successful (ME3), possibly mating not successful (ME0) at 25C.Person_evidenceWBPerson261
Curator_confirmedWBPerson712
PenetranceIncompletePerson_evidenceWBPerson261
Curator_confirmedWBPerson712
WBPhenotype:0000961Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
RemarkTable 1Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Phenotype_assayGenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
WBPhenotype:0001005Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0001183Paper_evidenceWBPaper00053362
Curator_confirmedWBPerson25685
WBPhenotype:0001412Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
RemarkAuthors report "multiple or discontinuous ala" (Table 1)Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Phenotype_assayGenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
WBPhenotype:0001517Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
RemarkAuthors report "abnormal branched annuli (lateral hypodermis)" and "wide annuli" (Table 1)Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
Phenotype_assayGenotypekaIs12 [col-19::gfp]Paper_evidenceWBPaper00005747
Curator_confirmedWBPerson2987
WBPhenotype:0002284Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002289Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002293Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002295Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002300Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002301Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002309Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002312Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002319Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002322Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002325Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002337Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0002345Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0004022Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
WBPhenotype:0004023Paper_evidenceWBPaper00043908
Curator_confirmedWBPerson2987
Phenotype_not_observedWBPhenotype:0000505Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
RemarkMales are not Ram.Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
EQ_annotationsAnatomy_termWBbt:0006941PATO:0000460Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
Life_stageWBls:0000056PATO:0000460Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
Phenotype_assayTemperature20CPaper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
Genotypehim-5(e1490)Paper_evidenceWBPaper00001328
Curator_confirmedWBPerson712
WBPhenotype:0001652Paper_evidenceWBPaper00032446
Curator_confirmedWBPerson2021
WBPhenotype:0001767Paper_evidenceWBPaper00032413
Curator_confirmedWBPerson2021
RemarkNo significant defects in embryonic DA/DB motor neuron left/right projection patterns (Figure S1A).Paper_evidenceWBPaper00032413
Curator_confirmedWBPerson2021
Variation_effectNullPaper_evidenceWBPaper00032413
Curator_confirmedWBPerson2021
ReferenceWBPaper00022233
WBPaper00015421
WBPaper00015107
WBPaper00043908
WBPaper00029020
WBPaper00032446
WBPaper00001328
WBPaper00000031
WBPaper00011213
WBPaper00032413
WBPaper00005747
WBPaper00011725
WBPaper00029002
WBPaper00014349
WBPaper00015055
WBPaper00018212
WBPaper00005927
WBPaper00016363
WBPaper00016119
WBPaper00015994
WBPaper00016075
WBPaper00016027
WBPaper00016014
WBPaper00015483
WBPaper00015253
WBPaper00014080
WBPaper00014086
WBPaper00014166
WBPaper00053362
WBPaper00061175
WBPaper00062015
WBPaper00065849
WBPaper00066003
Remarke678 is a ~9 kb deletion
Variation stub/paper connection generated from the May 2021 NN VFP dataset.
Created by WBPerson51134 from the NN_VFP_triage_pipeline
MethodDeletion_allele