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WormBase Tree Display for Variation: WBVar00144275

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Name Class

WBVar00144275EvidencePaper_evidenceWBPaper00003082
NamePublic_namee1745
Other_namee1745ts
CE51835:p.Trp1094Ter
CE32051:p.Trp1072Ter
F56D1.4d.1:c.3210G>A
F56D1.4e.1:c.3282G>A
F56D1.4a.1:c.3216G>A
F56D1.4b.1:c.3321G>A
CE32052:p.Trp1107Ter
CE26369:p.Trp1070Ter
HGVSgCHROMOSOME_II:g.5472274G>A
Sequence_detailsSMapS_parentSequenceF56D1
Flanking_sequencestgtgttcatctacaaagcacttgcggaatgcacatgtatggtgatactgatgaagatgtt
Mapping_targetF56D1
Type_of_mutationSubstitutiongaPaper_evidenceWBPaper00003082
SeqStatusSequenced
Variation_typeAllele
OriginSpeciesCaenorhabditis elegans
Strain (24)
LaboratoryCB
StatusLive
AffectsGeneWBGene00000548
TranscriptF56D1.4a.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScF56D1.4a.1:c.3216G>A
HGVSpCE32051:p.Trp1072Ter
cDNA_position3331
CDS_position3216
Protein_position1072
Exon_number17/20
Codon_changetgG/tgA
Amino_acid_changeW/*
F56D1.4e.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScF56D1.4e.1:c.3282G>A
HGVSpCE51835:p.Trp1094Ter
cDNA_position3282
CDS_position3282
Protein_position1094
Exon_number17/20
Codon_changetgG/tgA
Amino_acid_changeW/*
F56D1.4b.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScF56D1.4b.1:c.3321G>A
HGVSpCE32052:p.Trp1107Ter
cDNA_position3417
CDS_position3321
Protein_position1107
Exon_number18/21
Codon_changetgG/tgA
Amino_acid_changeW/*
F56D1.4d.1VEP_consequencestop_gained
VEP_impactHIGH
HGVScF56D1.4d.1:c.3210G>A
HGVSpCE26369:p.Trp1070Ter
cDNA_position3326
CDS_position3210
Protein_position1070
Exon_number17/20
Codon_changetgG/tgA
Amino_acid_changeW/*
Interactor (35)
GeneticsInterpolated_map_positionII-1.29801
Mapping_dataIn_2_point4225
In_multi_point850
851
852
853
881
882
1384
1789
2326
3137
In_pos_neg_data3803
7105
7111
7118
7120
7129
7133
Description (2)
Reference (20)
MethodSubstitution_allele