WormBase Tree Display for Variation: WBVar00145021
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WBVar00145021 | Evidence | Paper_evidence | WBPaper00028462 | |||
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Name | Public_name | e2825 | ||||
Other_name | T06H11.1f.1:c.413-1385_561+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | |||||
T06H11.1d.1:c.293-1385_441+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | ||||||
T06H11.1e.1:c.67+356_216+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | ||||||
T06H11.1g.1:c.137-1385_285+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | ||||||
T06H11.1c.1:c.149-1385_297+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | ||||||
T06H11.1b.1:c.263-1385_411+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | ||||||
HGVSg | CHROMOSOME_X:g.10108953_10110716delinsACGGTAGTTTCAGAAAAATTAGTTTTCAGCCTCAGAAGTCGCGGGGCCGCGCCGGAGGTGCGGTCCACGGCTGGTTTTTTAATATTTGGATTCCATGGGACCATTCTGTTTTGTTTCTATTTTTTGGTTTTTAATAGCAGATCGAATTCCAGTTAGACTATCTTTAGCAAAATACTCTACAAATTTGGTTCATTGG | |||||
Sequence_details | SMap | S_parent | Sequence | T06H11 | ||
Flanking_sequences | caatagggttacggtaggagtgctgtatga | taattcagaattttgaagactcttgttcac | ||||
Mapping_target | T06H11 | |||||
Type_of_mutation | Insertion | TCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGTAA | Paper_evidence | WBPaper00028462 | ||
Deletion | ||||||
SeqStatus | Sequenced | |||||
Variation_type | Allele | |||||
Origin | Species | Caenorhabditis elegans | ||||
Laboratory | CB | |||||
Status | Live | |||||
Affects | Gene | WBGene00006792 | ||||
Transcript | T06H11.1b.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | |||||
HGVSc | T06H11.1b.1:c.263-1385_411+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | |||||
Intron_number | 3-4/12 | |||||
Exon_number | 4/13 | |||||
T06H11.1g.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||
VEP_impact | HIGH | |||||
HGVSc | T06H11.1g.1:c.137-1385_285+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | |||||
Intron_number | 2-3/12 | |||||
Exon_number | 3/13 | |||||
T06H11.1f.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||
VEP_impact | HIGH | |||||
HGVSc | T06H11.1f.1:c.413-1385_561+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | |||||
Intron_number | 4-5/14 | |||||
Exon_number | 5/15 | |||||
T06H11.1e.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||
VEP_impact | HIGH | |||||
HGVSc | T06H11.1e.1:c.67+356_216+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | |||||
Intron_number | 2-3/13 | |||||
Exon_number | 3/14 | |||||
T06H11.1d.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||
VEP_impact | HIGH | |||||
HGVSc | T06H11.1d.1:c.293-1385_441+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | |||||
Intron_number | 1-2/11 | |||||
Exon_number | 2/12 | |||||
T06H11.1a.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,5_prime_UTR_variant,intron_variant | ||||
VEP_impact | HIGH | |||||
Intron_number | 1-2/11 | |||||
Exon_number | 1-2/12 | |||||
T06H11.1c.1 | VEP_consequence | splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant | ||||
VEP_impact | HIGH | |||||
HGVSc | T06H11.1c.1:c.149-1385_297+230delinsCCAATGAACCAAATTTGTAGAGTATTTTGCTAAAGATAGTCTAACTGGAATTCGATCTGCTATTAAAAACCAAAAAATAGAAACAAAACAGAATGGTCCCATGGAATCCAAATATTAAAAAACCAGCCGTGGACCGCACCTCCGGCGCGGCCCCGCGACTTCTGAGGCTGAAAACTAATTTTTCTGAAACTACCGT | |||||
Intron_number | 2-3/13 | |||||
Exon_number | 3/14 | |||||
Genetics | Interpolated_map_position | X | 1.74812 | |||
Reference | WBPaper00028462 | |||||
Method | Deletion_and_insertion_allele |