WormBase Tree Display for Variation: WBVar00145634

WBVar00145634 Evidence: Paper_evidence: WBPaper00032446
  Name: Public_name: gk227
    Other_name: F59F3.1.1:c.94-52_313del
    HGVSg: CHROMOSOME_X:g.10992957_10993292del
  Sequence_details: SMap: S_parent: Sequence: F59F3
    Flanking_sequences: aatttgaaattaagggcatagaatacataa ctggaacatattcatgctcttcaatggaac
    Mapping_target: F59F3
    Type_of_mutation: Deletion
    PCR_product: gk227_external
      gk227_internal
    SeqStatus: Sequenced
  Variation_type: Allele
  Origin: Species: Caenorhabditis elegans
    Strain: WBStrain00035773
    Laboratory: VC
    Person: WBPerson427
    KO_consortium_allele
    Status: Live
  Affects: Gene: WBGene00006896
    Transcript: F59F3.1.1 VEP_consequence: splice_acceptor_variant,splice_donor_variant,coding_sequence_variant,intron_variant
        VEP_impact: HIGH
        HGVSc: F59F3.1.1:c.94-52_313del
        cDNA_position: ?-367
        CDS_position: ?-313
        Protein_position: ?-105
        Intron_number: 2-3/15
        Exon_number: 3-4/16
  Isolation: Mutagen: TMP/UV
  Genetics: Mapping_data: In_multi_point: 4751
  Description: Phenotype_not_observed: WBPhenotype:0001524 Paper_evidence: WBPaper00036308
        Curator_confirmed: WBPerson2987
        Remark: 0% of ver-3(gk227) animals were resistant to EGF-induced sleep (Table 1) Paper_evidence: WBPaper00036308
            Curator_confirmed: WBPerson2987
        Phenotype_assay: Treatment: Animals carrying the hs:LIN-3 transgene were well fed and grown at 20C. Young adult animals were scored 2 hours after heat shock for EGF-induced sleep behavior (see Materials and methods). Paper_evidence: WBPaper00036308
              Curator_confirmed: WBPerson2987
          Genotype: hs:LIN-3 Paper_evidence: WBPaper00036308
              Curator_confirmed: WBPerson2987
      WBPhenotype:0001652 Paper_evidence: WBPaper00032446
        Curator_confirmed: WBPerson2021
  Reference: WBPaper00032446
    WBPaper00036308
  Remark: Sequenced by the C. elegans Gene Knockout Consortium Paper_evidence: WBPaper00041807
  Method: KO_consortium_allele