WormBase Tree Display for Variation: WBVar00145837
expand all nodes | collapse all nodes | view schema
WBVar00145837 | Evidence | Paper_evidence | WBPaper00031805 | ||
---|---|---|---|---|---|
Name | Public_name | gk431 | |||
Other_name | C48G7.3i.1:c.2961_3484+94delinsGAGATATGCAC | ||||
C48G7.3g.1:c.3777_4300+94delinsGAGATATGCAC | |||||
C48G7.3h.1:c.843_1366+94delinsGAGATATGCAC | |||||
C48G7.3a.1:c.4527_5050+94delinsGAGATATGCAC | |||||
C48G7.3j.1:c.1659_2182+94delinsGAGATATGCAC | |||||
C48G7.3k.1:c.1917_2440+94delinsGAGATATGCAC | |||||
C48G7.3d.1:c.1608_2131+94delinsGAGATATGCAC | |||||
C48G7.3f.1:c.4092_4615+94delinsGAGATATGCAC | |||||
C48G7.3l.1:c.1698_2221+94delinsGAGATATGCAC | |||||
HGVSg | CHROMOSOME_V:g.14785908_14786525delinsGTGCATATCTC | ||||
Sequence_details | SMap | S_parent | Sequence | Y50E8A | |
Flanking_sequences | tcgcatctggataatttaatacattttctt | gtctcttttgtgtcttttgtacaagcaacg | |||
Mapping_target | Y50E8A | ||||
Type_of_mutation | Insertion | GTGCATATCTC | |||
Deletion | |||||
PCR_product | gk431_external | ||||
gk431_internal | |||||
SeqStatus | Sequenced | ||||
Variation_type | Allele | ||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00036257 | ||||
Laboratory | VC | ||||
Person | WBPerson427 | ||||
KO_consortium_allele | |||||
Status | Live | ||||
Affects | Gene | WBGene00008183 | |||
Transcript | C48G7.3k.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | ||
VEP_impact | HIGH | ||||
HGVSc | C48G7.3k.1:c.1917_2440+94delinsGAGATATGCAC | ||||
cDNA_position | 1917-? | ||||
CDS_position | 1917-? | ||||
Protein_position | 639-? | ||||
Intron_number | 8/9 | ||||
Exon_number | 8/10 | ||||
C48G7.3i.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | C48G7.3i.1:c.2961_3484+94delinsGAGATATGCAC | ||||
cDNA_position | 2961-? | ||||
CDS_position | 2961-? | ||||
Protein_position | 987-? | ||||
Intron_number | 15/16 | ||||
Exon_number | 15/17 | ||||
C48G7.3d.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | C48G7.3d.1:c.1608_2131+94delinsGAGATATGCAC | ||||
cDNA_position | 1608-? | ||||
CDS_position | 1608-? | ||||
Protein_position | 536-? | ||||
Intron_number | 5/6 | ||||
Exon_number | 5/7 | ||||
C48G7.3a.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | C48G7.3a.1:c.4527_5050+94delinsGAGATATGCAC | ||||
cDNA_position | 4583-? | ||||
CDS_position | 4527-? | ||||
Protein_position | 1509-? | ||||
Intron_number | 24/26 | ||||
Exon_number | 24/27 | ||||
C48G7.3g.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | C48G7.3g.1:c.3777_4300+94delinsGAGATATGCAC | ||||
cDNA_position | 3777-? | ||||
CDS_position | 3777-? | ||||
Protein_position | 1259-? | ||||
Intron_number | 21/22 | ||||
Exon_number | 21/23 | ||||
C48G7.3f.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | C48G7.3f.1:c.4092_4615+94delinsGAGATATGCAC | ||||
cDNA_position | 4092-? | ||||
CDS_position | 4092-? | ||||
Protein_position | 1364-? | ||||
Intron_number | 22/23 | ||||
Exon_number | 22/24 | ||||
C48G7.3l.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | C48G7.3l.1:c.1698_2221+94delinsGAGATATGCAC | ||||
cDNA_position | 1698-? | ||||
CDS_position | 1698-? | ||||
Protein_position | 566-? | ||||
Intron_number | 6/7 | ||||
Exon_number | 6/8 | ||||
C48G7.3h.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | C48G7.3h.1:c.843_1366+94delinsGAGATATGCAC | ||||
cDNA_position | 843-? | ||||
CDS_position | 843-? | ||||
Protein_position | 281-? | ||||
Intron_number | 3/4 | ||||
Exon_number | 3/5 | ||||
C48G7.3j.1 | VEP_consequence | splice_donor_variant,coding_sequence_variant,intron_variant | |||
VEP_impact | HIGH | ||||
HGVSc | C48G7.3j.1:c.1659_2182+94delinsGAGATATGCAC | ||||
cDNA_position | 1763-? | ||||
CDS_position | 1659-? | ||||
Protein_position | 553-? | ||||
Intron_number | 7/9 | ||||
Exon_number | 7/10 | ||||
Isolation | Mutagen | TMP/UV | |||
Genetics | Mapping_data | In_multi_point | 5289 | ||
Description (2) | |||||
Reference | WBPaper00031805 | ||||
WBPaper00043985 | |||||
Remark | Sequenced by the C. elegans Gene Knockout Consortium | Paper_evidence | WBPaper00041807 | ||
Method | KO_consortium_allele |