WormBase Tree Display for Variation: WBVar00148006
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| WBVar00148006 | Name | Public_name | WBVar00148006 | ||
|---|---|---|---|---|---|
| Other_name | haw1256 | ||||
| haw113076 | |||||
| cewivar00161339 | |||||
| F54A5.2a.1:c.660+185C>T | |||||
| F54A5.2b.3:c.108+185C>T | |||||
| F54A5.2b.2:c.108+185C>T | |||||
| F54A5.2b.1:c.108+185C>T | |||||
| HGVSg | CHROMOSOME_I:g.966291G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | F54A5 | |
| Flanking_sequences | taaaaaggcaaagtatcaaattttg | tactccactcactatcgaagcagag | |||
| Mapping_target | F54A5 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006631 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00006637 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023072 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023192 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00024204 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027662 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar00532941 | |||
| WBVar01294317 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00018787 | |||
| Transcript | F54A5.2b.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | F54A5.2b.2:c.108+185C>T | ||||
| Intron_number | 6/8 | ||||
| F54A5.2a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F54A5.2a.1:c.660+185C>T | ||||
| Intron_number | 7/9 | ||||
| F54A5.2b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F54A5.2b.1:c.108+185C>T | ||||
| Intron_number | 6/8 | ||||
| F54A5.2b.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | F54A5.2b.3:c.108+185C>T | ||||
| Intron_number | 4/6 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw1256 | ||||
| Method | WGS_Hawaiian_Waterston |
