WormBase Tree Display for Variation: WBVar00152894
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| WBVar00152894 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00152894 | |||
| Other_name (11) | |||||
| HGVSg | CHROMOSOME_I:g.4231484A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | C43E11 | |
| Flanking_sequences | ttttgaattttcaaatcgaaaaaaa | accaaaatctctgttttttctttaa | |||
| Mapping_target | C43E11 | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| WBStrain00006629 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00023018 | From_analysis | Million_mutation_project_reanalysis | |||
| WBStrain00027652 | From_analysis | Million_mutation_project_reanalysis | |||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01343464 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00003516 | |||
| WBGene00305315 | |||||
| Transcript | C43E11.6e.2 | VEP_consequence | intron_variant | ||
| VEP_impact | MODIFIER | ||||
| HGVSc | C43E11.6e.2:c.-310-90A>T | ||||
| Intron_number | 1/9 | ||||
| C43E11.6a.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C43E11.6a.2:c.273-90A>T | ||||
| Intron_number | 4/11 | ||||
| C43E11.6e.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C43E11.6e.1:c.-122+259A>T | ||||
| Intron_number | 1/8 | ||||
| C43E11.6d.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C43E11.6d.1:c.272+259A>T | ||||
| Intron_number | 5/11 | ||||
| C43E11.6a.3 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C43E11.6a.3:c.273-90A>T | ||||
| Intron_number | 4/12 | ||||
| C43E11.6b.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C43E11.6b.1:c.189+625A>T | ||||
| Intron_number | 4/9 | ||||
| C43E11.6b.2 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C43E11.6b.2:c.189+625A>T | ||||
| Intron_number | 3/8 | ||||
| C43E11.14 | |||||
| C43E11.6a.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C43E11.6a.1:c.273-90A>T | ||||
| Intron_number | 5/12 | ||||
| C43E11.6c.1 | VEP_consequence | intron_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | C43E11.6c.1:c.*283-90A>T | ||||
| Intron_number | 4/10 | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw6144 | ||||
| Method | WGS_Hawaiian_Waterston |
