WormBase Tree Display for Variation: WBVar00165828
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| WBVar00165828 | Evidence | Paper_evidence | WBPaper00037807 | ||
|---|---|---|---|---|---|
| Name | Public_name | WBVar00165828 | |||
| Other_name | haw19078 | ||||
| cewivar00179564 | |||||
| CE53823:p.Arg54Ter | |||||
| Y16E11A.1.1:c.160A>T | |||||
| HGVSg | CHROMOSOME_II:g.1989524A>T | ||||
| Sequence_details | SMap | S_parent | Sequence | Y16E11A | |
| Flanking_sequences | aagagaaatggatattttgagttttatttg | gatgcgaaaaggacgaatgcgaaaa | |||
| Mapping_target | Y16E11A | ||||
| Type_of_mutation | Substitution | A | T | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
| WGS_Hawaiian_Waterston | |||||
| Million_mutation_project_reanalysis | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| Million_mutation_project_reanalysis | |||||
| History | Acquires_merge | WBVar01362019 | |||
| Status | Live | ||||
| Affects | Gene | WBGene00021193 | |||
| Transcript | Y16E11A.1.1 | VEP_consequence | stop_gained | ||
| VEP_impact | HIGH | ||||
| HGVSc | Y16E11A.1.1:c.160A>T | ||||
| HGVSp | CE53823:p.Arg54Ter | ||||
| cDNA_position | 160 | ||||
| CDS_position | 160 | ||||
| Protein_position | 54 | ||||
| Exon_number | 2/5 | ||||
| Codon_change | Aga/Tga | ||||
| Amino_acid_change | R/* | ||||
| Reference | WBPaper00037807 | ||||
| Remark | [20081124 db] this Variation was previously named hw19078 | ||||
| Method | WGS_Hawaiian_Waterston |
