WormBase Tree Display for Variation: WBVar00168192
expand all nodes | collapse all nodes | view schema
WBVar00168192 | Name | Public_name | WBVar00168192 | ||
---|---|---|---|---|---|
Other_name | pas27010 | ||||
haw21442 | |||||
haw127592 | |||||
Y110A2AR.3b.1:c.*561+126T>C | |||||
Y110A2AR.3b.2:c.*687T>C | |||||
Y110A2AR.3a.1:c.701+126T>C | |||||
HGVSg | CHROMOSOME_II:g.2914741A>G | ||||
Sequence_details | SMap | S_parent | Sequence | Y110A2AR | |
Flanking_sequences | ttgagattttcggcgattttcagat | atttttggccgtttttcggtgattt | |||
Mapping_target | Y110A2AR | ||||
Type_of_mutation | Substitution | A | G | ||
SeqStatus | Sequenced | ||||
Variation_type | SNP | ||||
Predicted_SNP | |||||
Natural_variant | |||||
Origin | Species | Caenorhabditis elegans | |||
Strain | WBStrain00004602 | From_analysis | WGS_De_Bono | ||
WGS_Hawaiian_Waterston | |||||
WGS_Yanai | |||||
WBStrain00004604 | From_analysis | WGS_Pasadena_Quinlan | |||
WBStrain00006642 | From_analysis | WGS_De_Bono | |||
WBStrain00022850 | From_analysis | WGS_De_Bono | |||
Laboratory | RW | ||||
AX | |||||
Person | WBPerson1562 | ||||
WBPerson6900 | |||||
WBPerson4037 | |||||
Analysis | WGS_Hawaiian_Waterston | ||||
WGS_De_Bono | |||||
WGS_Yanai | |||||
WGS_Pasadena_Quinlan | |||||
History | Acquires_merge | WBVar00215234 | |||
WBVar01300405 | |||||
WBVar01365652 | |||||
WBVar01234487 | |||||
WBVar00547457 | |||||
Status | Live | ||||
Affects | Gene | WBGene00022453 | |||
Transcript | Y110A2AR.3b.2 | VEP_consequence | 3_prime_UTR_variant | ||
VEP_impact | MODIFIER | ||||
HGVSc | Y110A2AR.3b.2:c.*687T>C | ||||
cDNA_position | 1060 | ||||
Exon_number | 8/8 | ||||
Y110A2AR.3a.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y110A2AR.3a.1:c.701+126T>C | ||||
Intron_number | 8/9 | ||||
Y110A2AR.3b.1 | VEP_consequence | intron_variant | |||
VEP_impact | MODIFIER | ||||
HGVSc | Y110A2AR.3b.1:c.*561+126T>C | ||||
Intron_number | 8/8 | ||||
Reference | WBPaper00038208 | ||||
WBPaper00037807 | |||||
Remark | [20081124 db] this Variation was previously named hw21442 | ||||
Method | WGS_Hawaiian_Waterston |