WormBase Tree Display for Variation: WBVar00172173
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| WBVar00172173 | Name | Public_name | WBVar00172173 | ||
|---|---|---|---|---|---|
| Other_name | pas35611 | ||||
| haw25423 | |||||
| haw130753 | |||||
| cewivar00090491 | |||||
| ZK177.8a.2:c.*158C>T | |||||
| ZK177.8b.3:c.*158C>T | |||||
| ZK177.8b.2:c.*158C>T | |||||
| ZK177.8a.1:c.*158C>T | |||||
| ZK177.8b.1:c.*158C>T | |||||
| HGVSg | CHROMOSOME_II:g.5509079G>A | ||||
| Sequence_details | SMap | S_parent | Sequence | ZK177 | |
| Flanking_sequences | aaacagcaaatagaaaggcaaaatt | catacagaaaatgcgaaaacttcta | |||
| Mapping_target | ZK177 | ||||
| Type_of_mutation | Substitution | G | A | ||
| SeqStatus | Sequenced | ||||
| Variation_type | SNP | ||||
| Predicted_SNP | |||||
| Natural_variant | |||||
| Origin | Species | Caenorhabditis elegans | |||
| Strain (38) | |||||
| Laboratory | RW | ||||
| AX | |||||
| Person | WBPerson1562 | ||||
| WBPerson6900 | |||||
| WBPerson4037 | |||||
| Analysis | WGS_Hawaiian_Waterston | ||||
| WGS_De_Bono | |||||
| WGS_Yanai | |||||
| Million_mutation_project_reanalysis | |||||
| WGS_Pasadena_Quinlan | |||||
| History | Acquires_merge | WBVar01240233 | |||
| WBVar00550618 | |||||
| WBVar01371949 | |||||
| WBVar00223835 | |||||
| WBVar01306046 | |||||
| Status | Live | ||||
| Affects | Gene | WBGene00022673 | |||
| WBGene00305941 | |||||
| Transcript | ZK177.14 | ||||
| ZK177.8a.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK177.8a.1:c.*158C>T | ||||
| cDNA_position | 2047 | ||||
| Exon_number | 11/11 | ||||
| ZK177.8b.1 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK177.8b.1:c.*158C>T | ||||
| cDNA_position | 1827 | ||||
| Exon_number | 9/9 | ||||
| ZK177.8a.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK177.8a.2:c.*158C>T | ||||
| cDNA_position | 1980 | ||||
| Exon_number | 10/10 | ||||
| ZK177.8b.3 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK177.8b.3:c.*158C>T | ||||
| cDNA_position | 1889 | ||||
| Exon_number | 10/10 | ||||
| ZK177.8b.2 | VEP_consequence | 3_prime_UTR_variant | |||
| VEP_impact | MODIFIER | ||||
| HGVSc | ZK177.8b.2:c.*158C>T | ||||
| cDNA_position | 1928 | ||||
| Exon_number | 10/10 | ||||
| Reference | WBPaper00038208 | ||||
| WBPaper00037807 | |||||
| Remark | [20081124 db] this Variation was previously named hw25423 | ||||
| Method | WGS_Hawaiian_Waterston |
